Publikationer

  • del Valle, Alba; Seip, Britta; Cervera-Marzal, Inaki; Sacheau, Guenael et al.

    Ornithine capture by a translating ribosome controls bacterial polyamine synthesis

    Ingår i Nature Microbiology, s. 554-+, 2020.

  • Stårsta, Magnus; Hammarlöf, Disa L.; Wäneskog, Marcus; Schlegel, Susan et al.

    RHS-elements function as type II toxin-antitoxin modules that regulate intra-macrophage replication of Salmonella Typhimurium

    Ingår i PLoS Genetics, 2020.

    Open access
  • Camsund, Daniel; Lawson, Michael J.; Larsson, Jimmy; Jones, Daniel et al.

    Time-resolved imaging-based CRISPRi screening

    Ingår i Nature Methods, s. 86-92, 2020.

  • Elias-Wolff, Federico; Lindén, Martin; Lyubartsev, Alexander P.; Brandt, Erik G.

    Curvature sensing by cardiolipin in simulated buckled membranes

    Ingår i Soft Matter, s. 792-802, 2019.

    Open access
  • Sabantsev, Anton; Levendosky, Robert F.; Zhuang, Xiaowei; Bowman, Gregory D. et al.

    Direct observation of coordinated DNA movements on the nucleosome during chromatin remodelling

    Ingår i Nature Communications, 2019.

    Open access
  • Zyubko, Tatyana; Serebryakova, Marina; Andreeva, Julia; Metelev, Mikhail et al.

    Efficient in vivo synthesis of lasso peptide pseudomycoidin proceeds in the absence of both the leader and the leader peptidase

    Ingår i Chemical Science, s. 9699-9707, 2019.

    Open access
  • Bowman, Gregory D.; Deindl, Sebastian

    Remodeling the genome with DNA twists

    Ingår i Science, s. 35-36, 2019.

  • Bashardanesh, Zahedeh; Elf, Johan; Zhang, Haiyang; Van der Spoel, David

    Rotational and Translational Diffusion of Proteins as a Function of Concentration

    Ingår i ACS OMEGA, s. 20654-20664, 2019.

    Open access
  • Volkov, Ivan; Johansson, Magnus

    Single-Molecule Tracking Approaches to Protein Synthesis Kinetics in Living Cells

    Ingår i Biochemistry, s. 7-14, 2019.

    Open access
  • Travin, Dmitrii Y.; Watson, Zoe L.; Metelev, Mikhail; Ward, Fred R. et al.

    Structure of ribosome-bound azole-modified peptide phazolicin rationalizes its species-specific mode of bacterial translation inhibition

    Ingår i Nature Communications, 2019.

    Open access
  • Romilly, Cedric; Deindl, Sebastian; Wagner, Gerhart E. H.

    The ribosomal protein S1-dependent standby site in tisB mRNA consists of a single-stranded region and a 5 ' structure element

    Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 15901-15906, 2019.

    Open access
  • Volkov, Ivan; Seefeldt, A. Carolin; Johansson, Magnus

    Tracking of single tRNAs for translation kinetics measurements in chloramphenicol treated bacteria

    Ingår i Methods, s. 23-30, 2019.

    Open access
  • Yang, Sora; Kim, Seunghyeon; Kim, Dong-Kyun; An, Hyeong Jeon et al.

    Transcription and translation contribute to gene locus relocation to the nucleoid periphery in E. coli

    Ingår i Nature Communications, 2019.

    Open access
  • Lindén, Martin

    An early peak in ion channel research

    Ingår i Nature Physics, s. 105-105, 2018.

  • Travin, Dmitrii Y.; Metelev, Mikhail; Serebryakova, Marina; Komarova, Ekaterina S. et al.

    Biosynthesis of Translation Inhibitor Klebsazolicin Proceeds through Heterocyclization and N-Terminal Amidine Formation Catalyzed by a Single YcaO Enzyme

    Ingår i Journal of the American Chemical Society, s. 5625-5633, 2018.

  • Elias-Wolff, Federico; Lindén, Martin; Lyubartsev, Alexander P.; Brandt, Erik G.

    Computing Curvature Sensitivity of Biomolecules in Membranes by Simulated Buckling

    Ingår i Journal of Chemical Theory and Computation, s. 1643-1655, 2018.

  • Ghosh, Anirban; Baltekin, Özden; Wäneskog, Marcus; Elkhalifa, Dina et al.

    Contact-dependent growth inhibition induces high levels of antibiotic-tolerant persister cells in clonal bacterial populations

    Ingår i EMBO Journal, 2018.

  • Liljeruhm, Josefine; Funk, Saskia K.; Tietscher, Sandra; Edlund, Anders D. et al.

    Engineering a palette of eukaryotic chromoproteins for bacterial synthetic biology

    Ingår i Journal of Biological Engineering, 2018.

    Open access
  • Wistrand-Yuen, Erik; Knopp, Michael; Hjort, Karin; Koskiniemi, Sanna et al.

    Evolution of high-level resistance during low-level antibiotic exposure

    Ingår i Nature Communications, 2018.

    Open access
  • Baltekin, Özden

    KN Direct phenotypic antimicrobial susceptibility testing under 30 minutes: Dynamics of single cell response revealed in automated microscopy with microfluidics

    Ingår i Journal of Veterinary Pharmacology and Therapeutics, s. 17-17, 2018.

  • Forcier, Talitha L.; Ayaz, Andalus; Gill, Manraj S.; Jones, Daniel et al.

    Measuring cis-regulatory energetics in living cells using allelic manifolds

    Ingår i eLIFE, 2018.

    Open access
  • Ballet, Caroline; Correia, Mario S. P.; Conway, Louis P.; Locher, Theresa L. et al.

    New enzymatic and mass spectrometric methodology for the selective investigation of gut microbiota-derived metabolites

    Ingår i Chemical Science, s. 6233-6239, 2018.

    Open access
  • Kipper, Kalle; Eremina, Nadja; Marklund, Emil; Tubasum, Sumera et al.

    Structure-guided approach to site-specific fluorophore labeling of the lac repressor LacI

    Ingår i PLoS ONE, 2018.

    Open access
  • Belliveau, Nathan M.; Barnes, Stephanie L.; Ireland, William T.; Jones, Daniel L. et al.

    Systematic approach for dissecting the molecular mechanisms of transcriptional regulation in bacteria

    Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. E4796-E4805, 2018.

  • Volkov, Ivan; Lindén, Martin; Aguirre, Javier; Ieong, Ka-Weng et al.

    tRNA tracking for direct measurements of protein synthesis kinetics in live cells

    Ingår i Nature Chemical Biology, s. 618-626, 2018.

  • Lindén, Martin; Elf, Johan

    Variational Algorithms for Analyzing Noisy Multistate Diffusion Trajectories

    Ingår i Biophysical Journal, s. 276-282, 2018.

  • Baltekin, Özden; Boucharin, Alexis; Tano, Eva; Andersson, Dan I et al.

    Antibiotic susceptibility testing in less than 30 min using direct single-cell imaging

    Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 9170-9175, 2017.

  • Kipper, Kalle; Lundius, Ebba G.; Ćurić, Vladimir; Nikic, Ivana et al.

    Application of Noncanonical Amino Acids for Protein Labeling in a Genomically Recoded Escherichia coli

    Ingår i ACS Photonics, s. 233-255, 2017.

  • Saupe, Falk; Reichel, Matthias; Huijbers, Elisabeth J. M.; Femel, Julia et al.

    Development of a novel therapeutic vaccine carrier that sustains high antibody titers against several targets simultaneously

    Ingår i The FASEB Journal, s. 1204-1214, 2017.

  • Doudna, Jennifer; Bar-Ziv, Roy; Elf, Johan; Noireaux, Vincent et al.

    How Will Kinetics and Thermodynamics Inform Our Future Efforts to Understand and Build Biological Systems?

    Ingår i CELL SYSTEMS, s. 144-146, 2017.

  • Lawson, Michael J.; Camsund, Daniel; Larsson, Jimmy; Baltekin, Özden et al.

    In situ genotyping of a pooled strain library after characterizing complex phenotypes

    Ingår i Molecular Systems Biology, 2017.

    Open access
  • Jones, Daniel; Unoson, Cecilia; Leroy, Prune; Curic, Vladimir et al.

    Kinetics of dCas9 Target Search in Escherichia Coli

    Ingår i Biophysical Journal, s. 314A-314A, 2017.

  • Jones, Daniel; Leroy, Prune; Unoson, Cecilia; Fange, David et al.

    Kinetics of dCas9 target search in Escherichia coli

    Ingår i Science, s. 1420-1423, 2017.

  • Marklund, Emil; Amselem, Elias; Kipper, Kalle; Johansson, Magnus et al.

    Measuring the Orientation of Single Proteins Interacting with DNA using Fluorescence Polarization Microscopy

    Ingår i Biophysical Journal, s. 169A-169A, 2017.

  • Lehmann, Laura C.; Hewitt, Graeme; Aibara, Shintaro; Leitner, Alexander et al.

    Mechanistic Insights into Autoinhibition of the Oncogenic Chromatin Remodeler ALC1

    Ingår i Molecular Cell, s. 847-859.e7, 2017.

    Open access
  • Balzarotti, Francisco; Eilers, Yvan; Gwosch, Klaus C.; Gynnå, Arvid H. et al.

    Nanometer resolution imaging and tracking of fluorescent molecules with minimal photon fluxes

    Ingår i Science, s. 606-612, 2017.

  • Lindén, Martin; Curic, Vladimir; Amselem, Elias; Elf, Johan

    Pointwise error estimates in localization microscopy

    Ingår i Nature Communications, 2017.

    Open access
  • Amselem, Elias; Marklund, Emil; Kipper, Kalle; Johansson, Magnus et al.

    Real- Time Single Protein Tracking with Polarization Readout using a Confocal Microscope

    Ingår i Biophysical Journal, s. 295A-295A, 2017.

  • Pandzic, Tatjana; Rendo, Verónica; Lim, Jinyeong; Larsson, Chatarina et al.

    Somatic PRDM2 c.4467delA mutations in colorectal cancers control histone methylation and tumor growth

    Ingår i OncoTarget, s. 98646-98659, 2017.

    Open access
  • Lind, Peter A.; Arvidsson, Lars; Berg, Otto; Andersson, Dan I.

    Variation in Mutational Robustness between Different Proteins and the Predictability of Fitness Effects

    Ingår i Molecular biology and evolution, s. 408-418, 2017.

  • Martyna, Agnieszka; Gomez-Llobregat, Jordi; Lindén, Martin; Rossman, Jeremy S.

    Curvature Sensing by a Viral Scission Protein

    Ingår i Biochemistry, s. 3493-3496, 2016.

  • Elf, Johan

    Hypothesis: Homologous Recombination Depends on Parallel Search

    Ingår i CELL SYSTEMS, s. 325-327, 2016.

  • Volkov, Ivan; Aguirre, Javier; Lindén, Martin; Elf, Johan et al.

    In Vivo Measurements of Protein Synthesis Kinetics using Single-Molecule Tracking of E.Coli tRNAS

    Ingår i Biophysical Journal, s. 351A-351A, 2016.

  • Belikov, Sergey; Berg, Otto G.; Wrange, Orjan

    Quantification of transcription factor-DNA binding affinity in a living cell

    Ingår i Nucleic Acids Research, s. 3045-3058, 2016.

    Open access
  • Lindén, Martin; Ćurić, Vladimir; Boucharin, Alexis; Fange, David et al.

    Simulated single molecule microscopy with SMeagol

    Ingår i Bioinformatics, s. 2394-2395, 2016.

    Open access
  • Levendosky, Robert F.; Sabantsev, Anton; Deindl, Sebastian; Bowman, Gregory D.

    The Chd1 chromatin remodeler shifts hexasomes unidirectionally

    Ingår i eLIFE, 2016.

    Open access
  • Berg, Otto G.; Mahmutovic, Anel; Marklund, Emil; Elf, Johan

    The helical structure of DNA facilitates binding

    Ingår i Journal of Physics A, 2016.

  • Walldén, Mats; Fange, David; Lundius, Ebba Gregorsson; Baltekin, Özden et al.

    The Synchronization of Replication and Division Cycles in Individual E. coli Cells

    Ingår i Cell, s. 729-739, 2016.