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A. Sabantsev, G. Mao, J. Aguirre Rivera, M. Panfilov, A. Arseniev, O. Ho, M. Khodorkovskiy, S. Deindl, Spatiotemporally controlled generation of NTPs for single-molecule studies
Nature Chemical Biology 2022, doi: 10.1038/s41589-022-01100-9
se även den medföljande artikeln i News & Views Very fast nucleotides on demand

E. Marklund, G. Mao, J. Yan, S. Zikrin, E. Abdurakhmanov, S. Deindl*, J. Elf*, Sequence specificity in DNA binding is mainly governed by association
Science 2022, doi: 10.1126/science.abg7427

L. Bacic, G. Gaullier, A. Sabantsev, L. C. Lehmann, K. Brackmann, D. Dimakou, M. Halic, G. Hewitt, S. J. Boulton, S. Deindl, Structure and dynamics of the chromatin remodeler ALC1 bound to a PARylated nucleosome
eLife 2021, doi: 10.7554/eLife.71420

I. Regadas, O. Dahlberg, R. Vaid, O. Ho, S. Belikov, G. Dixit, S. Deindl, J. Wen, M. Mannervik, A unique histone 3 lysine 14 chromatin signature underlies tissue-specific gene regulation
Molecular Cell 2021, doi: 10.1016/j.molcel.2021.01.041

G. Hewitt, V. Borel, S. Segura-Bayona, T. Takaki, P. Ruis, R. Bellelli, L. C. Lehmann, L. Sommerova, A. Vancevska, A. Tomas-Loba, K. Zhu, C. Cooper, K. Fugger, H. Patel, R. Goldstone, D. Schneider-Luftman, E. Herbert, G. Stamp, R. Brough, S. Pettitt, C. J. Lord, S. C. West, I. Ahel, D. Ahel, J. R. Chapman, S. Deindl , S. J. Boulton, Defective ALC1 nucleosome remodeling confers PARPi sensitization and synthetic lethality with HRD
Molecular Cell 2020, doi: 10.1016/j.molcel.2020.12.006

L. C. Lehmann, L. Bacic, G. Hewitt, K. Brackmann, A. Sabantsev, G. Gaullier, S. Pytharopoulou, G. Degliesposti, H. Okkenhaug, S. Tan, A. Costa, J. M. Skehel, S. J. Boulton, S. Deindl, Mechanistic Insights into Regulation of the ALC1 Remodeler by the Nucleosome Acidic Patch
Cell Reports 2020, doi: 10.1016/j.celrep.2020.108529

L. Bacic, A. Sabantsev, and S. Deindl, Recent advances in single-molecule fluorescence microscopy render structural biology dynamic
Current Opinion in Structural Biology 2020, doi: 10.1016/j.sbi.2020.05.006

E. Marklund, B. van Oosten, G. Mao, E. Amselem, K. Kipper, A. Sabantsev, A. Emmerich, D. Globisch, X. Zheng, L. C. Lehmann, O. Berg, M. Johansson, J. Elf, S. Deindl, DNA surface exploration and operator bypassing during target search
Nature 2020, doi: 10.1038/s41586-020-2413-7

G. Bowman and S. Deindl, Remodeling the genome with DNA twists
Science 2019, doi: 10.1126/science.aay4317

C. Romilly, S. Deindl and E.G.H. Wagner, The ribosomal protein S1-dependent standby site in tisB mRNA consists of a single-stranded region and a 5′ structure element
PNAS 2019, doi: 10.1073/pnas.1904309116

A. Sabantsev, R.F. Levendosky, X. Zhuang, G.D. Bowman and S. Deindl, Direct observation of coordinated DNA movements on the nucleosome during chromatin remodelling
Nature Communications 2019, doi: 10.1038/s41467-019-09657-1

L.C. Lehmann, G. Hewitt, S. Aibara, A. Leitner, E. Marklund, S.L. Maslen, V. Maturi, Y. Chen, D. van der Spoel, J.M. Skehel, A. Moustakas, S. J. Boulton and S. Deindl, Mechanistic Insights into Autoinhibition of the Oncogenic Chromatin Remodeler ALC1
Molecular Cell 68 (2017), pp. 847–859

W.L. Hwang*, S. Deindl*, B.T. Harada and X. Zhuang, Histone H4 tail mediates allosteric regulation of nucleosome remodelling by linker DNA *equal contribution
Nature 512 (2014), pp. 213-217

S. Deindl, W.L. Hwang, S.K. Hota, T.R. Blosser, P. Prasad, B. Bartholomew and X. Zhuang, ISWI Remodelers Slide Nucleosomes with Coordinated Multi-Base-Pair Entry Steps and Single-Base-Pair Exit Steps
Cell 152 (2013), pp. 442-452

S. Deindl, T.A. Kadlecek, X. Cao, J. Kuriyan and A. Weiss, Stability of an autoinhibitory interface in the structure of the tyrosine kinase ZAP-70 impacts T cell receptor response
PNAS 106 (2009), pp. 20699-704

S. Deindl, T.A. Kadlecek, T. Brdicka, X. Cao, A. Weiss and J. Kuriyan, Structural basis for the inhibition of tyrosine kinase activity of ZAP-70
Cell 129 (2007), pp.735-746

O.S. Rosenberg, S. Deindl, R.J. Sung, A.C. Nairn, J. Kuriyan, Structure of the autoinhibited kinase domain of CaMKII and SAXS analysis of the holoenzyme
Cell 123 (2005), pp. 849-860

KOMPLETT LISTA ÖVER PUBLIKATIONER

E. Marklund, G. Mao, J. Yan, S. Zikrin, E. Abdurakhmanov, S. Deindl*, J. Elf*, Sequence specificity in DNA binding is mainly governed by association
Science 2022, doi: 10.1126/science.abg7427

B. Luescher, I. Ahel, M. Altmeyer, A. Ashworth, P. Bai, P. Chang, M. Cohen, D. Corda, F. Dantzer, M. D. Daugherty, T. M. Dawson, V. L. Dawson, S. Deindl, A. R. Fehr, K. L. H. Feijs, D. V. Filippov, J-P. Gagné, G. Grimaldi, S. Guettler, N. C. Hoch, M. O. Hottiger, P. Korn, W. L. Kraus, A. Ladurner, L. Lehtiö, A. K. L. Leung, C. J. Lord, A. Mangerich, I. Matic, J. Matthews, G-L. Moldovan, J. Moss, G. Natoli, M. L. Nielsen, M. Niepel, F. Nolte, J. Pascal, B. M. Paschal, K. Pawlowski, G. G. Poirier, S. Smith, G. Timinszky, Z-Q. Wang, J. Yélamos, X. Yu, R. Zaja, M. Ziegler, ADP-ribosyltransferases, an update on function and nomenclature
FEBS Journal 2021, doi.: 10.1111/febs.16142

S. Deindl, J. Elf, More Than Just Letters and Chemistry: Genomics Goes Mechanics
Trends in Biochemical Sciences 2021, doi: 10.1016/j.tibs.2021.03.004

G. Bowman and S. Deindl, Remodeling the genome with DNA twists
Science 2019, doi: 10.1126/science.aay4317

Q. Liao , M. Lüking , D.M. Krüger , S. Deindl , J. Elf , P.M. Kasson and S.C.L. Kamerlin
Long Time-Scale Atomistic Simulations of the Structure and Dynamics of Transcription Factor-DNA Recognition
J. Phys. Chem. B 2019, doi: 10.1021/acs.jpcb.8b12363

E. Marklund*, E. Amselem*, K. Kipper, X. Zheng, M. Johansson, S. Deindl**, J. Elf**, Direct observation of rotation-coupled protein diffusion along DNA on the microsecond timescale
bioRxiv 2018, doi: 10.1101/401414

C. Ballet, M. S. P. Correia, L. P. Conway, T. L. Locher, L.C. Lehmann, N. Garg, M. Vujasinovic, S. Deindl, J.-M. Löhr, and D. Globisch, New enzymatic and mass spectrometric methodology for the selective investigation of gut microbiota-derived metabolites
Chemical Science 9 (2018), pp. 6233-6239

K. Kipper, N. Eremina, E. Marklund, S. Tubasum, G. Mao, L. C. Lehmann, J. Elf, and S. Deindl, Structure-guided approach to site-specific fluorophore labeling of the lac repressor LacI
PLoS One 13:6 (2018): e0198416

R. Levendosky, A. Sabantsev, S. Deindl, G. Bowman, The Chd1 chromatin remodeler shifts hexasomes unidirectionally
eLife (2016), 5:e21356

F. Saupe, M. Reichel, E. Huijbers, J. Femel, P. Markgren, E. Andersson, S. Deindl, H. Danielsson, L. Hellman, A. Olsson, Development of a novel therapeutic vaccine carrier that sustains high antibody titers against several targets simultaneously
FASEB J 31:3 (2017), pp. 1204-1214

B.T. Harada, W.L. Hwang, S. Deindl, N. Chatterjee, B. Bartholomew, X. Zhuang, Stepwise nucleosome translocation by RSC remodeling complexes
eLife (2016), 5:e10051

W.L. Hwang*, S. Deindl*, B.T. Harada and X. Zhuang, Histone H4 tail mediates allosteric regulation of nucleosome remodelling by linker DNA *equal contribution
Nature 512 (2014), pp. 213-217

Q. Yan, T. Barros, P.R. Visperas, S. Deindl, T.A. Kadlecek, A. Weiss and J. Kuriyan, Structural basis for activation of ZAP-70 by phosphorylation of the SH2-kinase linker
Molecular and Cellular Biology 33 (2013), pp. 2188-201

S.K. Hota, S.K. Bhardwaj, S. Deindl, Y. Lin, X. Zhuang, and B. Bartholomew, Nucleosome mobilization by ISW2 requires the concerted action of the ATPase and SLIDE domains
Nature Structural & Molecular Biology 20 (2013), pp. 222-229

S. Deindl and X. Zhuang, Monitoring conformational dynamics with single-molecule fluorescence energy transfer: applications in nucleosome remodeling
Methods in Enzymology 513 (2012), pp. 59-86

L.H. Chao, P. Pellicena, S. Deindl, L.A. Barclay, H. Schulman and J. Kuriyan, Inter-subunit capture of regulatory segments is a component of cooperative CaMKII activation
Nature Structural & Molecular Biology 17 (2010), pp. 264-72

N. Jura, N.F. Endres, K. Engel, S. Deindl, X. Zhang and J. Kuriyan, Mechanism for activation of the EGF receptor catalytic domain by the juxtamembrane segment
Cell 137 (2009), pp. 1293-307

B.B. Au-Yeung, S. Deindl, H. Lih-Yun, E.H. Palacios, S.E. Levin, J. Kuriyan and A. Weiss, The structure, regulation, and function of ZAP-70
Immunological Reviews 228 (2009), pp. 41-57

S. Deindl, T.A. Kadlecek, T. Brdicka, X. Cao, A. Weiss and J. Kuriyan, Structural basis for the inhibition of tyrosine kinase activity of ZAP-70
Cell 129 (2007), pp.735-746

O.S. Rosenberg, S. Deindl, L.R. Comolli, A. Hoelz, K.H. Downing, A.C. Nairn, J. Kuriyan, Oligomerization states of the association domain and the holoenyzme of Ca²⁺/CaM kinase II
FEBS J 273 (2006), pp. 682-694

O.S. Rosenberg, S. Deindl, R.J. Sung, A.C. Nairn, J. Kuriyan, Structure of the autoinhibited kinase domain of CaMKII and SAXS analysis of the holoenzyme
Cell 123 (2005), pp. 849-860

M. Schütt, S.S. Krupka, A.G. Milbradt, S. Deindl, E.K. Sinner, D. Oesterhelt, C. Renner, L. Moroder, Photocontrol of cell adhesion processes: model studies with cyclic azobenzene-RGD peptides
Chemistry & Biology 10 (2003), pp. 487-490