Publikationer

Noise reduction and mask removal neural network for X-ray single-particle imaging

Bellisario, Alfredo; Maia, Filipe; Ekeberg, Tomas

Ingår i Journal of applied crystallography, s. 122-132, 2022.

DOI för Noise reduction and mask removal neural network for X-ray single-particle imaging Ladda ner fulltext (pdf) av Noise reduction and mask removal neural network for X-ray single-particle imaging

Unsupervised learning approaches to characterizing heterogeneous samples using X-ray single-particle imaging

Zhuang, Yulong; Awel, Salah; Barty, Anton; Bean, Richard et al.

Ingår i IUCrJ, s. 204-214, 2022.

DOI för Unsupervised learning approaches to characterizing heterogeneous samples using X-ray single-particle imaging Ladda ner fulltext (pdf) av Unsupervised learning approaches to characterizing heterogeneous samples using X-ray single-particle imaging

Ptychographic wavefront characterization for single-particle imaging at x-ray lasers

Daurer, Benedikt J.; Sala, Simone; Hantke, Max; Reddy, Hemanth K.N. et al.

Ingår i Optica, s. 551-562, 2021.

DOI för Ptychographic wavefront characterization for single-particle imaging at x-ray lasers Ladda ner fulltext (pdf) av Ptychographic wavefront characterization for single-particle imaging at x-ray lasers

3D diffractive imaging of nanoparticle ensembles using an x-ray laser

Ayyer, Kartik; Xavier, P. Lourdu; Bielecki, Johan; Shen, Zhou et al.

Ingår i Optica, s. 15-23, 2021.

DOI för 3D diffractive imaging of nanoparticle ensembles using an x-ray laser Ladda ner fulltext (pdf) av 3D diffractive imaging of nanoparticle ensembles using an x-ray laser

Megahertz single-particle imaging at the European XFEL

Sobolev, Egor; Zolotarev, Serguey; Giewekemeyer, Klaus; Bielecki, Johan et al.

Ingår i Communications Physics, 2020.

DOI för Megahertz single-particle imaging at the European XFEL Ladda ner fulltext (pdf) av Megahertz single-particle imaging at the European XFEL

Ab initio phasing of the diffraction of crystals with translational disorder

Morgan, Andrew J.; Ayyer, Kartik; Barty, Anton; Chen, Joe P. J. et al.

Ingår i ACTA CRYSTALLOGRAPHICA A: FOUNDATION AND ADVANCES, s. 25-40, 2019.

DOI för Ab initio phasing of the diffraction of crystals with translational disorder Ladda ner fulltext (pdf) av Ab initio phasing of the diffraction of crystals with translational disorder

Reproducibility of Single Protein Explosions Induced by X-ray Lasers

Östlin, Christofer; Timneanu, Nicusor; Jönsson, H. Olof; Ekeberg, Tomas et al.

Ingår i Physical Chemistry, Chemical Physics - PCCP, s. 12381-12389, 2018.

DOI för Reproducibility of Single Protein Explosions Induced by X-ray Lasers

Femtosecond X-ray Fourier holography imaging of free-flying nanoparticles

Gorkhover, Tais; Ulmer, Anatoli; Ferguson, Ken; Bucher, Max et al.

Ingår i Nature Photonics, s. 150-153, 2018.

DOI för Femtosecond X-ray Fourier holography imaging of free-flying nanoparticles

Coherent diffraction of single Rice Dwarf Virus particles using soft X-rays at the Linac Coherent Light Source

Munke, Anna; van der Schot, Gijs; Maia, Filipe; Ekeberg, Tomas et al.

Ingår i Nature Scientific Data, 2018.

Considerations for three-dimensional image reconstruction from experimental data in coherent diffractive imaging

Lundholm, Ida V.; Sellberg, Jonas A.; Ekeberg, Tomas; Hantke, Max F. et al.

Ingår i IUCrJ, s. 531-541, 2018.

DOI för Considerations for three-dimensional image reconstruction from experimental data in coherent diffractive imaging

Coherent soft X-ray diffraction imaging of Coliphage PR772 at the Linac coherent light source

Reddy, Hemanth K. N.; Yoon, Chun Hong; Aquila, Andrew; Awel, Salah et al.

Ingår i Scientific Data, 2017.

DOI för Coherent soft X-ray diffraction imaging of Coliphage PR772 at the Linac coherent light source

Single-shot diffraction data from the Mimivirus particle using an X-ray free-electron laser

Ekeberg, Tomas; Svenda, Martin; Seibert, M. Marvin; Abergel, Chantal et al.

Ingår i Scientific Data, 2016.

DOI för Single-shot diffraction data from the Mimivirus particle using an X-ray free-electron laser Ladda ner fulltext (pdf) av Single-shot diffraction data from the Mimivirus particle using an X-ray free-electron laser

Condor: a simulation tool for flash X-ray imaging

Hantke, Max F.; Ekeberg, Tomas; Maia, Filipe R. N. C.

Ingår i Journal of applied crystallography, s. 1356-1362, 2016.

DOI för Condor: a simulation tool for flash X-ray imaging Ladda ner fulltext (pdf) av Condor: a simulation tool for flash X-ray imaging

A data set from flash X-ray imaging of carboxysomes

Hantke, Max F.; Hasse, Dirk; Ekeberg, Tomas; John, Katja et al.

Ingår i Scientific Data, 2016.

DOI för A data set from flash X-ray imaging of carboxysomes Ladda ner fulltext (pdf) av A data set from flash X-ray imaging of carboxysomes

Open data set of live cyanobacterial cells imaged using an X-ray laser

van der Schot, Gijs; Svenda, Martin; Maia, Filipe R.N.C.; Hantke, Max F. et al.

Ingår i Scientific Data, 2016.

DOI för Open data set of live cyanobacterial cells imaged using an X-ray laser Ladda ner fulltext (pdf) av Open data set of live cyanobacterial cells imaged using an X-ray laser

Three-dimensional reconstruction of the giant mimivirus particle with an X-ray free-electron laser

Ekeberg, Tomas; Svenda, Martin; Abergel, Chantal; Maia, Filipe R. N. C. et al.

Ingår i Physical Review Letters, s. 098102:1-6, 2015.

DOI för Three-dimensional reconstruction of the giant mimivirus particle with an X-ray free-electron laser Ladda ner fulltext (pdf) av Three-dimensional reconstruction of the giant mimivirus particle with an X-ray free-electron laser

Machine learning for ultrafast X-ray diffraction patterns on large-scale GPU clusters

Ekeberg, Tomas; Engblom, Stefan; Liu, Jing

Ingår i The international journal of high performance computing applications, s. 233-243, 2015.

DOI för Machine learning for ultrafast X-ray diffraction patterns on large-scale GPU clusters Ladda ner fulltext (pdf) av Machine learning for ultrafast X-ray diffraction patterns on large-scale GPU clusters

Imaging single cells in a beam of live cyanobacteria with an X-ray laser

van der Schot, Gijs; Svenda, Martin; Maia, Filipe R. N. C.; Hantke, Max et al.

Ingår i Nature Communications, 2015.

DOI för Imaging single cells in a beam of live cyanobacteria with an X-ray laser

High-throughput imaging of heterogeneous cell organelles with an X-ray laser

Hantke, Max F.; Hasse, Dirk; Maia, Filipe R. N. C.; Ekeberg, Tomas et al.

Ingår i Nature Photonics, s. 943-949, 2014.

DOI för High-throughput imaging of heterogeneous cell organelles with an X-ray laser

Explosion dynamics of sucrose nanospheres monitored by time of flight spectrometry and coherent diffractive imaging at the split-and-delay beam line of the FLASH soft X-ray laser

Rath, Asawari D.; Timneanu, Nicusor; Maia, Filipe R. N. C.; Bielecki, Johan et al.

Ingår i Optics Express, s. 28914-28925, 2014.

DOI för Explosion dynamics of sucrose nanospheres monitored by time of flight spectrometry and coherent diffractive imaging at the split-and-delay beam line of the FLASH soft X-ray laser

Automated identification and classification of single particle serial femtosecond X-ray diffraction data

Andreasson, Jakob; Martin, Andrew V.; Liang, Meng; Timneanu, Nicusor et al.

Ingår i Optics Express, s. 2497-2510, 2014.

DOI för Automated identification and classification of single particle serial femtosecond X-ray diffraction data Ladda ner fulltext (pdf) av Automated identification and classification of single particle serial femtosecond X-ray diffraction data

Mesoscale morphology of airborne core-shell nanoparticle clusters: x-ray laser coherent diffraction imaging

Pedersoli, E.; Loh, N. D.; Capotondi, F.; Hampton, C. Y. et al.

Ingår i Journal of Physics B, s. 164033-, 2013.

DOI för Mesoscale morphology of airborne core-shell nanoparticle clusters: x-ray laser coherent diffraction imaging

Toward unsupervised single-shot diffractive imaging of heterogeneous particles using X-ray free-electron lasers

Park, Hyung Joo; Loh, N. Duane; Sierra, Raymond G.; Hampton, Christina Y. et al.

Ingår i Optics Express, s. 28729-28742, 2013.

DOI för Toward unsupervised single-shot diffractive imaging of heterogeneous particles using X-ray free-electron lasers

Sensing the wavefront of x-ray free-electron lasers using aerosol spheres

Loh, N. Duane; Starodub, Dmitri; Lomb, Lukas; Hampton, Christina Y. et al.

Ingår i Optics Express, s. 12385-12394, 2013.

DOI för Sensing the wavefront of x-ray free-electron lasers using aerosol spheres

The extraction of single-particle diffraction patterns from a multiple-particle diffraction pattern

Martin, A. V.; Morgan, A. J.; Ekeberg, Tomas; Loh, N. D. et al.

Ingår i Optics Express, s. 15102-15112, 2013.

DOI för The extraction of single-particle diffraction patterns from a multiple-particle diffraction pattern

Fractal morphology, imaging and mass spectrometry of single aerosol particles in flight

Loh, N. D.; Hampton, C. Y.; Martin, A. V.; Starodub, D. et al.

Ingår i Nature, s. 513-517, 2012.

DOI för Fractal morphology, imaging and mass spectrometry of single aerosol particles in flight

Lipidic phase membrane protein serial femtosecond crystallography

Johansson, Linda C; Arnlund, David; White, Thomas A; Katona, Gergely et al.

Ingår i Nature Methods, s. 263-265, 2012.

DOI för Lipidic phase membrane protein serial femtosecond crystallography

Self-terminating diffraction gates femtosecond X-ray nanocrystallography measurements

Barty, Anton; Caleman, Carl; Aquila, Andrew; Timneanu, Nicusor et al.

Ingår i Nature Photonics, s. 35-40, 2012.

DOI för Self-terminating diffraction gates femtosecond X-ray nanocrystallography measurements

In vivo protein crystallization opens new routes in structural biology

Koopmann, Rudolf; Cupelli, Karolina; Redecke, Lars; Nass, Karol et al.

Ingår i Nature Methods, s. 259-262, 2012.

DOI för In vivo protein crystallization opens new routes in structural biology

Noise-robust coherent diffractive imaging with a single diffraction pattern

Martin, A. V.; Wang, F.; Loh, N. D.; Ekeberg, Tomas et al.

Ingår i Optics Express, s. 16650-16661, 2012.

Radiation damage in protein serial femtosecond crystallography using an x-ray free-electron laser

Lomb, Lukas; Barends, Thomas R. M.; Kassemeyer, Stephan; Aquila, Andrew et al.

Ingår i Physical Review B. Condensed Matter and Materials Physics, s. 214111-1-214111-6, 2011.

DOI för Radiation damage in protein serial femtosecond crystallography using an x-ray free-electron laser

Single mimivirus particles intercepted and imaged with an X-ray laser

Seibert, M. Marvin; Ekeberg, Tomas; Maia, Filipe R. N. C.; Svenda, Martin et al.

Ingår i Nature, s. 78-81, 2011.

DOI för Single mimivirus particles intercepted and imaged with an X-ray laser

Unsupervised classification of single-particle X-ray diffraction snapshots by spectral clustering

Yoon, Chun Hong; Schwander, Peter; Abergel, Chantal; Andersson, Inger et al.

Ingår i Optics Express, s. 16542-16549, 2011.

DOI för Unsupervised classification of single-particle X-ray diffraction snapshots by spectral clustering

Femtosecond diffractive imaging of biological cells

Seibert, M. Marvin; Boutet, Sebastien; Svenda, Martin; Ekeberg, Tomas et al.

Ingår i Journal of Physics B, s. 194015-, 2010.

DOI för Femtosecond diffractive imaging of biological cells

Cryptotomography: Reconstructing 3D Fourier Intensities from Randomly Oriented Single-Shot Diffraction Patterns

Loh, N. D.; Bogan, M. J.; Elser, V.; Barty, A. et al.

Ingår i Physical Review Letters, s. 225501-1-225501-5, 2010.

DOI för Cryptotomography: Reconstructing 3D Fourier Intensities from Randomly Oriented Single-Shot Diffraction Patterns

Hawk: the image reconstruction package for coherent X-ray diffractive imaging

Maia, Filipe R. N. C.; Ekeberg, Tomas; van der Spoel, David; Hajdu, Janos

Ingår i Journal of applied crystallography, s. 1535-1539, 2010.

DOI för Hawk: the image reconstruction package for coherent X-ray diffractive imaging

Structural variability and the incoherent addition of scattered intensities in single-particle diffraction

Maia, Filipe R. N. C.; Ekeberg, Tomas; Timneanu, Nicusor; van der Spoel, David et al.

Ingår i Physical Review E. Statistical, Nonlinear, and Soft Matter Physics, s. 031905-, 2009.

DOI för Structural variability and the incoherent addition of scattered intensities in single-particle diffraction