Publications

Antibiotic perseverance increases the risk of resistance development

Brandis, Gerrit; Larsson, Jimmy; Elf, Johan

Part of Proceedings of the National Academy of Sciences of the United States of America, 2023.

DOI for Antibiotic perseverance increases the risk of resistance development Download full text (pdf) of Antibiotic perseverance increases the risk of resistance development

Can molecular dynamics be used to simulate biomolecular recognition?

Lüking, Malin; Van der Spoel, David; Elf, Johan; Tribello, Gareth A. A.

Part of Journal of Chemical Physics, 2023.

DOI for Can molecular dynamics be used to simulate biomolecular recognition?

Real-time single-molecule 3D tracking in E. coli based on cross-entropy minimization

Amselem, Elias; Broadwater, Bo; Haevermark, Tora; Johansson, Magnus et al.

Part of Nature Communications, 2023.

DOI for Real-time single-molecule 3D tracking in E. coli based on cross-entropy minimization Download full text (pdf) of Real-time single-molecule 3D tracking in E. coli based on cross-entropy minimization

ADP-ribosyltransferases, an update on function and nomenclature

Lüscher, Bernhard; Ahel, Ivan; Altmeyer, Matthias; Ashworth, Alan et al.

Part of The FEBS Journal, p. 7399-7410, 2022.

DOI for ADP-ribosyltransferases, an update on function and nomenclature Download full text (pdf) of ADP-ribosyltransferases, an update on function and nomenclature

Direct measurements of mRNA translation kinetics in living cells

Metelev, Mikhail; Lundin, Erik; Volkov, Ivan; Gynna, Arvid H. et al.

Part of Nature Communications, 2022.

DOI for Direct measurements of mRNA translation kinetics in living cells Download full text (pdf) of Direct measurements of mRNA translation kinetics in living cells

Evolution of Bacterial Interspecies Hybrids with Enlarged Chromosomes

Bartke, Katrin; Huseby, Douglas L; Brandis, Gerrit; Hughes, Diarmaid

Part of Genome Biology and Evolution, 2022.

DOI for Evolution of Bacterial Interspecies Hybrids with Enlarged Chromosomes Download full text (pdf) of Evolution of Bacterial Interspecies Hybrids with Enlarged Chromosomes

Rapid antibiotic susceptibility testing and species identification for mixed samples

Kandavalli, Vinodh; Karempudi, Praneeth; Larsson, Jimmy; Elf, Johan

Part of Nature Communications, 2022.

DOI for Rapid antibiotic susceptibility testing and species identification for mixed samples Download full text (pdf) of Rapid antibiotic susceptibility testing and species identification for mixed samples

Sequence specificity in DNA binding is mainly governed by association

Marklund, Emil; Mao, Guanzhong; Yuan, Jinwen; Zikrin, Spartak et al.

Part of Science, p. 442-445, 2022.

DOI for Sequence specificity in DNA binding is mainly governed by association Download full text (pdf) of Sequence specificity in DNA binding is mainly governed by association

Spatiotemporal kinetics of the SRP pathway in live E. coil cells

Volkov, Ivan; Lundin, Erik; Kipper, Kalle; Metelev, Mikhail et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, 2022.

DOI for Spatiotemporal kinetics of the SRP pathway in live E. coil cells Download full text (pdf) of Spatiotemporal kinetics of the SRP pathway in live E. coil cells

Spatiotemporally controlled generation of NTPs for single-molecule studies

Sabantsev, Anton; Mao, Guanzhong; Aguirre, Javier Rivera; Panfilov, Mikhail et al.

Part of Nature Chemical Biology, p. 1144-+, 2022.

DOI for Spatiotemporally controlled generation of NTPs for single-molecule studies Download full text (pdf) of Spatiotemporally controlled generation of NTPs for single-molecule studies

A unique histone 3 lysine 14 chromatin signature underlies tissue-specific gene regulation

Regadas, Isabel; Dahlberg, Olle; Vaid, Roshan; Ho, Oanh et al.

Part of Molecular Cell, p. 1766-1780.e10, 2021.

DOI for A unique histone 3 lysine 14 chromatin signature underlies tissue-specific gene regulation Download full text (pdf) of A unique histone 3 lysine 14 chromatin signature underlies tissue-specific gene regulation

Defective ALC1 nucleosome remodeling confers PARPi sensitization and synthetic lethality with HRD

Hewitt, Graeme; Borel, Valerie; Segura-Bayona, Sandra; Takaki, Tohru et al.

Part of Molecular Cell, p. 767-783.e11, 2021.

DOI for Defective ALC1 nucleosome remodeling confers PARPi sensitization and synthetic lethality with HRD Download full text (pdf) of Defective ALC1 nucleosome remodeling confers PARPi sensitization and synthetic lethality with HRD

Direct measurements of erythromycin’s effect on protein synthesis kinetics in living bacterial cells

Seefeldt, A. Carolin; Aguirre Rivera, Javier; Johansson, Magnus

Part of Journal of Molecular Biology, 2021.

DOI for Direct measurements of erythromycin’s effect on protein synthesis kinetics in living bacterial cells Download full text (pdf) of Direct measurements of erythromycin’s effect on protein synthesis kinetics in living bacterial cells

Imaging-based screens of pool-synthesized cell libraries

Lawson, Michael; Elf, Johan

Part of Nature Methods, p. 358-365, 2021.

DOI for Imaging-based screens of pool-synthesized cell libraries

More Than Just Letters and Chemistry: Genomics Goes Mechanics

Deindl, Sebastian; Elf, Johan

Part of TIBS -Trends in Biochemical Sciences. Regular ed., p. 431-432, 2021.

DOI for More Than Just Letters and Chemistry: Genomics Goes Mechanics

Paladin is a phosphoinositide phosphatase regulating endosomal VEGFR2 signalling and angiogenesis

Nitzsche, Anja; Pietilä, Riikka; Love, Dominic T.; Testini, Chiara et al.

Part of EMBO Reports, 2021.

DOI for Paladin is a phosphoinositide phosphatase regulating endosomal VEGFR2 signalling and angiogenesis Download full text (pdf) of Paladin is a phosphoinositide phosphatase regulating endosomal VEGFR2 signalling and angiogenesis

Real-time measurements of aminoglycoside effects on protein synthesis in live cells

Aguirre Rivera, Javier; Larsson, Jimmy; Volkov, Ivan; Seefeldt, A. Carolin et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, 2021.

DOI for Real-time measurements of aminoglycoside effects on protein synthesis in live cells Download full text (pdf) of Real-time measurements of aminoglycoside effects on protein synthesis in live cells

RecA finds homologous DNA by reduced dimensionality search

Wiktor, Jakub; Gynnå, Arvid H.; Leroy, Prune; Larsson, Jimmy et al.

Part of Nature, p. 426-429, 2021.

DOI for RecA finds homologous DNA by reduced dimensionality search Download full text (pdf) of RecA finds homologous DNA by reduced dimensionality search

Reconstructing the Evolutionary History of a Highly Conserved Operon Cluster in Gammaproteobacteria and Bacilli

Brandis, Gerrit

Part of Genome Biology and Evolution, 2021.

DOI for Reconstructing the Evolutionary History of a Highly Conserved Operon Cluster in Gammaproteobacteria and Bacilli Download full text (pdf) of Reconstructing the Evolutionary History of a Highly Conserved Operon Cluster in Gammaproteobacteria and Bacilli

Structure and dynamics of the chromatin remodeler ALC1 bound to a PARylated nucleosome

Bacic, Luka; Gaullier, Guillaume; Sabantsev, Anton; Lehmann, Laura C. et al.

Part of eLIFE, 2021.

DOI for Structure and dynamics of the chromatin remodeler ALC1 bound to a PARylated nucleosome

The highly dynamic nature of bacterial heteroresistance impairs its clinical detection

Pereira, Cátia; Larsson, Jimmy; Hjort, Karin; Elf, Johan et al.

Part of Communications Biology, 2021.

DOI for The highly dynamic nature of bacterial heteroresistance impairs its clinical detection Download full text (pdf) of The highly dynamic nature of bacterial heteroresistance impairs its clinical detection

DNA surface exploration and operator bypassing during target search

Marklund, Emil; van Oosten, Brad; Mao, Guanzhong; Amselem, Elias et al.

Part of Nature, p. 858-+, 2020.

DOI for DNA surface exploration and operator bypassing during target search Download full text (pdf) of DNA surface exploration and operator bypassing during target search

Mechanistic Insights into Regulation of the ALC1 Remodeler by the Nucleosome Acidic Patch

Lehmann, Laura C.; Bacic, Luka; Hewitt, Graeme; Brackmann, Klaus et al.

Part of Cell reports, 2020.

DOI for Mechanistic Insights into Regulation of the ALC1 Remodeler by the Nucleosome Acidic Patch Download full text (pdf) of Mechanistic Insights into Regulation of the ALC1 Remodeler by the Nucleosome Acidic Patch

Ornithine capture by a translating ribosome controls bacterial polyamine synthesis

Herrero del Valle, Alba; Seip, Britta; Cervera-Marzal, Iñaki; Sacheau, Guénaël et al.

Part of Nature Microbiology, p. 554-561, 2020.

DOI for Ornithine capture by a translating ribosome controls bacterial polyamine synthesis

Rationally designed Spot 42 RNAs with an inhibition/toxicity profile advantageous for engineering E. coli

Vogel, Carolin; Gynnå, Arvid H.; Yuan, Jinwen; Bao, Letian et al.

Part of ENGINEERING REPORTS, 2020.

DOI for Rationally designed Spot 42 RNAs with an inhibition/toxicity profile advantageous for engineering E. coli Download full text (pdf) of Rationally designed Spot 42 RNAs with an inhibition/toxicity profile advantageous for engineering E. coli

Recent advances in single-molecule fluorescence microscopy render structural biology dynamic

Bacic, Luka; Sabantsev, Anton; Deindl, Sebastian

Part of Current opinion in structural biology, p. 61-68, 2020.

DOI for Recent advances in single-molecule fluorescence microscopy render structural biology dynamic Download full text (pdf) of Recent advances in single-molecule fluorescence microscopy render structural biology dynamic

RHS-elements function as type II toxin-antitoxin modules that regulate intra-macrophage replication of Salmonella Typhimurium

Stårsta, Magnus; Hammarlöf, Disa L.; Wäneskog, Marcus; Schlegel, Susan et al.

Part of PLOS Genetics, 2020.

DOI for RHS-elements function as type II toxin-antitoxin modules that regulate intra-macrophage replication of Salmonella Typhimurium Download full text (pdf) of RHS-elements function as type II toxin-antitoxin modules that regulate intra-macrophage replication of Salmonella Typhimurium

Time-resolved imaging-based CRISPRi screening

Camsund, Daniel; Lawson, Michael J.; Larsson, Jimmy; Jones, Daniel et al.

Part of Nature Methods, p. 86-92, 2020.

DOI for Time-resolved imaging-based CRISPRi screening

Curvature sensing by cardiolipin in simulated buckled membranes

Elias-Wolff, Federico; Lindén, Martin; Lyubartsev, Alexander P.; Brandt, Erik G.

Part of Soft Matter, p. 792-802, 2019.

DOI for Curvature sensing by cardiolipin in simulated buckled membranes Download full text (pdf) of Curvature sensing by cardiolipin in simulated buckled membranes

Direct observation of coordinated DNA movements on the nucleosome during chromatin remodelling

Sabantsev, Anton; Levendosky, Robert F.; Zhuang, Xiaowei; Bowman, Gregory D. et al.

Part of Nature Communications, 2019.

DOI for Direct observation of coordinated DNA movements on the nucleosome during chromatin remodelling Download full text (pdf) of Direct observation of coordinated DNA movements on the nucleosome during chromatin remodelling

Efficient in vivo synthesis of lasso peptide pseudomycoidin proceeds in the absence of both the leader and the leader peptidase

Zyubko, Tatyana; Serebryakova, Marina; Andreeva, Julia; Metelev, Mikhail et al.

Part of Chemical Science, p. 9699-9707, 2019.

DOI for Efficient in vivo synthesis of lasso peptide pseudomycoidin proceeds in the absence of both the leader and the leader peptidase Download full text (pdf) of Efficient in vivo synthesis of lasso peptide pseudomycoidin proceeds in the absence of both the leader and the leader peptidase

Remodeling the genome with DNA twists

Bowman, Gregory D.; Deindl, Sebastian

Part of Science, p. 35-36, 2019.

DOI for Remodeling the genome with DNA twists Download full text (pdf) of Remodeling the genome with DNA twists

Rotational and Translational Diffusion of Proteins as a Function of Concentration

Bashardanesh, Zahedeh; Elf, Johan; Zhang, Haiyang; Van der Spoel, David

Part of ACS Omega, p. 20654-20664, 2019.

DOI for Rotational and Translational Diffusion of Proteins as a Function of Concentration Download full text (pdf) of Rotational and Translational Diffusion of Proteins as a Function of Concentration

Single-Molecule Tracking Approaches to Protein Synthesis Kinetics in Living Cells

Volkov, Ivan; Johansson, Magnus

Part of Biochemistry, p. 7-14, 2019.

DOI for Single-Molecule Tracking Approaches to Protein Synthesis Kinetics in Living Cells Download full text (pdf) of Single-Molecule Tracking Approaches to Protein Synthesis Kinetics in Living Cells

Structure of ribosome-bound azole-modified peptide phazolicin rationalizes its species-specific mode of bacterial translation inhibition

Travin, Dmitrii Y.; Watson, Zoe L.; Metelev, Mikhail; Ward, Fred R. et al.

Part of Nature Communications, 2019.

DOI for Structure of ribosome-bound azole-modified peptide phazolicin rationalizes its species-specific mode of bacterial translation inhibition Download full text (pdf) of Structure of ribosome-bound azole-modified peptide phazolicin rationalizes its species-specific mode of bacterial translation inhibition

The ribosomal protein S1-dependent standby site in tisB mRNA consists of a single-stranded region and a 5 ' structure element

Romilly, Cedric; Deindl, Sebastian; Wagner, Gerhart E. H.

Part of Proceedings of the National Academy of Sciences of the United States of America, p. 15901-15906, 2019.

DOI for The ribosomal protein S1-dependent standby site in tisB mRNA consists of a single-stranded region and a 5 ' structure element Download full text (pdf) of The ribosomal protein S1-dependent standby site in tisB mRNA consists of a single-stranded region and a 5 ' structure element

Tracking of single tRNAs for translation kinetics measurements in chloramphenicol treated bacteria

Volkov, Ivan; Seefeldt, A. Carolin; Johansson, Magnus

Part of Methods, p. 23-30, 2019.

DOI for Tracking of single tRNAs for translation kinetics measurements in chloramphenicol treated bacteria Download full text (pdf) of Tracking of single tRNAs for translation kinetics measurements in chloramphenicol treated bacteria

Transcription and translation contribute to gene locus relocation to the nucleoid periphery in E. coli

Yang, Sora; Kim, Seunghyeon; Kim, Dong-Kyun; An, Hyeong Jeon et al.

Part of Nature Communications, 2019.

DOI for Transcription and translation contribute to gene locus relocation to the nucleoid periphery in E. coli Download full text (pdf) of Transcription and translation contribute to gene locus relocation to the nucleoid periphery in E. coli

An early peak in ion channel research

Lindén, Martin

Part of Nature Physics, p. 105-105, 2018.

DOI for An early peak in ion channel research

Biosynthesis of Translation Inhibitor Klebsazolicin Proceeds through Heterocyclization and N-Terminal Amidine Formation Catalyzed by a Single YcaO Enzyme

Travin, Dmitrii Y.; Metelev, Mikhail; Serebryakova, Marina; Komarova, Ekaterina S. et al.

Part of Journal of the American Chemical Society, p. 5625-5633, 2018.

DOI for Biosynthesis of Translation Inhibitor Klebsazolicin Proceeds through Heterocyclization and N-Terminal Amidine Formation Catalyzed by a Single YcaO Enzyme

Computing Curvature Sensitivity of Biomolecules in Membranes by Simulated Buckling

Elias-Wolff, Federico; Lindén, Martin; Lyubartsev, Alexander P.; Brandt, Erik G.

Part of Journal of Chemical Theory and Computation, p. 1643-1655, 2018.

DOI for Computing Curvature Sensitivity of Biomolecules in Membranes by Simulated Buckling

Contact-dependent growth inhibition induces high levels of antibiotic-tolerant persister cells in clonal bacterial populations

Ghosh, Anirban; Baltekin, Özden; Wäneskog, Marcus; Elkhalifa, Dina et al.

Part of EMBO Journal, 2018.

DOI for Contact-dependent growth inhibition induces high levels of antibiotic-tolerant persister cells in clonal bacterial populations

Engineering a palette of eukaryotic chromoproteins for bacterial synthetic biology

Liljeruhm, Josefine; Funk, Saskia K.; Tietscher, Sandra; Edlund, Anders D. et al.

Part of Journal of Biological Engineering, 2018.

DOI for Engineering a palette of eukaryotic chromoproteins for bacterial synthetic biology Download full text (pdf) of Engineering a palette of eukaryotic chromoproteins for bacterial synthetic biology

Evolution of high-level resistance during low-level antibiotic exposure

Wistrand-Yuen, Erik; Knopp, Michael; Hjort, Karin; Koskiniemi, Sanna et al.

Part of Nature Communications, 2018.

DOI for Evolution of high-level resistance during low-level antibiotic exposure Download full text (pdf) of Evolution of high-level resistance during low-level antibiotic exposure

KN Direct phenotypic antimicrobial susceptibility testing under 30 minutes: Dynamics of single cell response revealed in automated microscopy with microfluidics

Baltekin, Özden

Part of Journal of Veterinary Pharmacology and Therapeutics, p. 17-17, 2018.

DOI for KN Direct phenotypic antimicrobial susceptibility testing under 30 minutes: Dynamics of single cell response revealed in automated microscopy with microfluidics

Measuring cis-regulatory energetics in living cells using allelic manifolds

Forcier, Talitha L.; Ayaz, Andalus; Gill, Manraj S.; Jones, Daniel et al.

Part of eLIFE, 2018.

DOI for Measuring cis-regulatory energetics in living cells using allelic manifolds Download full text (pdf) of Measuring cis-regulatory energetics in living cells using allelic manifolds

New enzymatic and mass spectrometric methodology for the selective investigation of gut microbiota-derived metabolites

Ballet, Caroline; Correia, Mario S. P.; Conway, Louis P.; Locher, Theresa L. et al.

Part of Chemical Science, p. 6233-6239, 2018.

DOI for New enzymatic and mass spectrometric methodology for the selective investigation of gut microbiota-derived metabolites Download full text (pdf) of New enzymatic and mass spectrometric methodology for the selective investigation of gut microbiota-derived metabolites

Structure-guided approach to site-specific fluorophore labeling of the lac repressor LacI

Kipper, Kalle; Eremina, Nadja; Marklund, Emil; Tubasum, Sumera et al.

Part of PLOS ONE, 2018.

DOI for Structure-guided approach to site-specific fluorophore labeling of the lac repressor LacI Download full text (pdf) of Structure-guided approach to site-specific fluorophore labeling of the lac repressor LacI

Systematic approach for dissecting the molecular mechanisms of transcriptional regulation in bacteria

Belliveau, Nathan M.; Barnes, Stephanie L.; Ireland, William T.; Jones, Daniel L. et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, p. E4796-E4805, 2018.

DOI for Systematic approach for dissecting the molecular mechanisms of transcriptional regulation in bacteria

tRNA tracking for direct measurements of protein synthesis kinetics in live cells

Volkov, Ivan; Lindén, Martin; Aguirre, Javier; Ieong, Ka-Weng et al.

Part of Nature Chemical Biology, p. 618-626, 2018.

DOI for tRNA tracking for direct measurements of protein synthesis kinetics in live cells

Variational Algorithms for Analyzing Noisy Multistate Diffusion Trajectories

Lindén, Martin; Elf, Johan

Part of Biophysical Journal, p. 276-282, 2018.

DOI for Variational Algorithms for Analyzing Noisy Multistate Diffusion Trajectories

Antibiotic susceptibility testing in less than 30 min using direct single-cell imaging

Baltekin, Özden; Boucharin, Alexis; Tano, Eva; Andersson, Dan I et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, p. 9170-9175, 2017.

DOI for Antibiotic susceptibility testing in less than 30 min using direct single-cell imaging

Application of Noncanonical Amino Acids for Protein Labeling in a Genomically Recoded Escherichia coli

Kipper, Kalle; Lundius, Ebba G.; Ćurić, Vladimir; Nikic, Ivana et al.

Part of ACS Photonics, p. 233-255, 2017.

DOI for Application of Noncanonical Amino Acids for Protein Labeling in a Genomically Recoded Escherichia coli

Development of a novel therapeutic vaccine carrier that sustains high antibody titers against several targets simultaneously

Saupe, Falk; Reichel, Matthias; Huijbers, Elisabeth J. M.; Femel, Julia et al.

Part of The FASEB Journal, p. 1204-1214, 2017.

DOI for Development of a novel therapeutic vaccine carrier that sustains high antibody titers against several targets simultaneously

How Will Kinetics and Thermodynamics Inform Our Future Efforts to Understand and Build Biological Systems?

Doudna, Jennifer; Bar-Ziv, Roy; Elf, Johan; Noireaux, Vincent et al.

Part of CELL SYSTEMS, p. 144-146, 2017.

In situ genotyping of a pooled strain library after characterizing complex phenotypes

Lawson, Michael J.; Camsund, Daniel; Larsson, Jimmy; Baltekin, Özden et al.

Part of Molecular Systems Biology, 2017.

DOI for In situ genotyping of a pooled strain library after characterizing complex phenotypes Download full text (pdf) of In situ genotyping of a pooled strain library after characterizing complex phenotypes

Kinetics of dCas9 Target Search in Escherichia Coli

Jones, Daniel; Unoson, Cecilia; Leroy, Prune; Curic, Vladimir et al.

Part of Biophysical Journal, p. 314A-314A, 2017.

Kinetics of dCas9 target search in Escherichia coli

Jones, Daniel; Leroy, Prune; Unoson, Cecilia; Fange, David et al.

Part of Science, p. 1420-1423, 2017.

DOI for Kinetics of dCas9 target search in Escherichia coli

Measuring the Orientation of Single Proteins Interacting with DNA using Fluorescence Polarization Microscopy

Marklund, Emil; Amselem, Elias; Kipper, Kalle; Johansson, Magnus et al.

Part of Biophysical Journal, p. 169A-169A, 2017.

Mechanistic Insights into Autoinhibition of the Oncogenic Chromatin Remodeler ALC1

Lehmann, Laura C.; Hewitt, Graeme; Aibara, Shintaro; Leitner, Alexander et al.

Part of Molecular Cell, p. 847-859.e7, 2017.

DOI for Mechanistic Insights into Autoinhibition of the Oncogenic Chromatin Remodeler ALC1 Download full text (pdf) of Mechanistic Insights into Autoinhibition of the Oncogenic Chromatin Remodeler ALC1

Nanometer resolution imaging and tracking of fluorescent molecules with minimal photon fluxes

Balzarotti, Francisco; Eilers, Yvan; Gwosch, Klaus C.; Gynnå, Arvid H. et al.

Part of Science, p. 606-612, 2017.

DOI for Nanometer resolution imaging and tracking of fluorescent molecules with minimal photon fluxes

Pointwise error estimates in localization microscopy

Lindén, Martin; Curic, Vladimir; Amselem, Elias; Elf, Johan

Part of Nature Communications, 2017.

DOI for Pointwise error estimates in localization microscopy Download full text (pdf) of Pointwise error estimates in localization microscopy

Real- Time Single Protein Tracking with Polarization Readout using a Confocal Microscope

Amselem, Elias; Marklund, Emil; Kipper, Kalle; Johansson, Magnus et al.

Part of Biophysical Journal, p. 295A-295A, 2017.

Somatic PRDM2 c.4467delA mutations in colorectal cancers control histone methylation and tumor growth

Pandzic, Tatjana; Rendo, Verónica; Lim, Jinyeong; Larsson, Chatarina et al.

Part of OncoTarget, p. 98646-98659, 2017.

DOI for Somatic PRDM2 c.4467delA mutations in colorectal cancers control histone methylation and tumor growth

Variation in Mutational Robustness between Different Proteins and the Predictability of Fitness Effects

Lind, Peter A.; Arvidsson, Lars; Berg, Otto; Andersson, Dan I.

Part of Molecular biology and evolution, p. 408-418, 2017.

DOI for Variation in Mutational Robustness between Different Proteins and the Predictability of Fitness Effects

Curvature Sensing by a Viral Scission Protein

Martyna, Agnieszka; Gomez-Llobregat, Jordi; Lindén, Martin; Rossman, Jeremy S.

Part of Biochemistry, p. 3493-3496, 2016.

DOI for Curvature Sensing by a Viral Scission Protein

Hypothesis: Homologous Recombination Depends on Parallel Search

Elf, Johan

Part of CELL SYSTEMS, p. 325-327, 2016.

DOI for Hypothesis: Homologous Recombination Depends on Parallel Search

In Vivo Measurements of Protein Synthesis Kinetics using Single-Molecule Tracking of E.Coli tRNAS

Volkov, Ivan; Aguirre, Javier; Lindén, Martin; Elf, Johan et al.

Part of Biophysical Journal, p. 351A-351A, 2016.

Quantification of transcription factor-DNA binding affinity in a living cell

Belikov, Sergey; Berg, Otto G.; Wrange, Orjan

Part of Nucleic Acids Research, p. 3045-3058, 2016.

DOI for Quantification of transcription factor-DNA binding affinity in a living cell Download full text (pdf) of Quantification of transcription factor-DNA binding affinity in a living cell

Simulated single molecule microscopy with SMeagol

Lindén, Martin; Ćurić, Vladimir; Boucharin, Alexis; Fange, David et al.

Part of Bioinformatics, p. 2394-2395, 2016.

DOI for Simulated single molecule microscopy with SMeagol Download full text (pdf) of Simulated single molecule microscopy with SMeagol

The Chd1 chromatin remodeler shifts hexasomes unidirectionally

Levendosky, Robert F.; Sabantsev, Anton; Deindl, Sebastian; Bowman, Gregory D.

Part of eLIFE, 2016.

DOI for The Chd1 chromatin remodeler shifts hexasomes unidirectionally Download full text (pdf) of The Chd1 chromatin remodeler shifts hexasomes unidirectionally

The helical structure of DNA facilitates binding

Berg, Otto G.; Mahmutovic, Anel; Marklund, Emil; Elf, Johan

Part of Journal of Physics A, 2016.

DOI for The helical structure of DNA facilitates binding

The Synchronization of Replication and Division Cycles in Individual E. coli Cells

Walldén, Mats; Fange, David; Lundius, Ebba Gregorsson; Baltekin, Özden et al.

Part of Cell, p. 729-739, 2016.

DOI for The Synchronization of Replication and Division Cycles in Individual E. coli Cells

Training of Machine Learning Methods for Fluorescent Spot Detection

Ishaq, Omer; Curic, Vladimir; Wählby, Carolina