Publications

  • Reimegård, Johan; Tarbier, Marcel; Danielsson, Marcus; Schuster, Jens et al.

    A combined approach for single-cell mRNA and intracellular protein expression analysis

    Part of Communications Biology, 2021.

    Open access
  • Coleman, Gareth A.; Davin, Adrian A.; Mahendrarajah, Tara A.; Szantho, Lenard L. et al.

    A rooted phylogeny resolves early bacterial evolution

    Part of Science, 2021.

  • Kjellin, Jonas; Avesson, Lotta; Reimegård, Johan; Liao, Zhen et al.

    Abundantly expressed class of noncoding RNAs conserved through the multicellular evolution of dictyostelid social amoebas

    Part of Genome Research, p. 436-447, 2021.

    Open access
  • Fritzell, Peter; Hägg, Olle; Bergström, Tomas; Jönsson, Bodil et al.

    Antibiotics should not be used for back/leg pain

    Part of Acta Orthopaedica, p. 244-246, 2021.

    Open access
  • Patriarca, Claudia; Sedano Núñez, Vicente T.; Garcia, Sarahi L; Bergquist, Jonas et al.

    Character and environmental lability of cyanobacteria-derived dissolved organic matter

    Part of Limnology and Oceanography, p. 496-509, 2021.

    Open access
  • Zaghlool, Ammar; Niazi, Adnan; Björklund, Åsa K.; Orzechowski Westholm, Jakub et al.

    Characterization of the nuclear and cytosolic transcriptomes in human brain tissue reveals new insights into the subcellular distribution of RNA transcripts

    Part of Scientific Reports, 2021.

    Open access
  • Baiao, Guilherme Costa; Janice, Jessin; Galinou, Maria; Klasson, Lisa

    Comparative Genomics Reveals Factors Associated with Phenotypic Expression of Wolbachia

    Part of Genome Biology and Evolution, 2021.

    Open access
  • Gawryluk, Ryan M. R.; Stairs, Courtney W.

    Diversity of electron transport chains in anaerobic protists

    Part of Biochimica et Biophysica Acta - Bioenergetics, 2021.

    Open access
  • Wäneskog, Marcus; Halvorsen, Tiffany; Filek, Klara; Xu, Feifei et al.

    Escherichia coli EC93 deploys two plasmid- encoded class I contact- dependent growth inhibition systems for antagonistic bacterial interactions

    Part of MICROBIAL GENOMICS, 2021.

    Open access
  • Brandis, Gerrit; Gockel, Jonas; Garoff, Linnea; Guy, Lionel et al.

    Expression of the qepA1 gene is induced under antibiotic exposure

    Part of Journal of Antimicrobial Chemotherapy, p. 1433-1440, 2021.

    Open access
  • Chen, Junfeng; Bi, Huijuan; Pettersson, Mats; Sato, Daiki et al.

    Functional differences between TSHR alleles associate with variation in spawning season in Atlantic herring

    Part of Communications Biology, 2021.

    Open access
  • Ahluwalia, Tarunveer S.; Prins, Bram P.; Abdollahi, Mohammadreza; Armstrong, Nicola J. et al.

    Genome-wide association study of circulating interleukin 6 levels identifies novel loci

    Part of Human Molecular Genetics, p. 393-409, 2021.

    Open access
  • von Seth, Johanna; Dussex, Nicolas; Díez-del-Molino, David; van der Valk, Tom et al.

    Genomic insights into the conservation status of the world's last remaining Sumatran rhinoceros populations

    Part of Nature Communications, 2021.

    Open access
  • Charbord, Jeremie; Ren, Lipeng; Sharma, Rohit B.; Johansson, Anna et al.

    In vivo screen identifies a SIK inhibitor that induces beta cell proliferation through a transient UPR

    Part of Nature Metabolism, p. 682-+, 2021.

  • Fritzell, Peter; Bergström, Tomas; Andersson, Siv G. E.; Jönsson, Bodil et al.

    Letter to the editor concerning "Comment to chronic low back pain, bacterial infection and treatment with antibiotics"

    Part of The spine journal, p. 1233-1235, 2021.

  • Martinez, Julien; Klasson, Lisa; Welch, John J.; Jiggins, Francis M.

    Life and Death of Selfish Genes: Comparative Genomics Reveals the Dynamic Evolution of Cytoplasmic Incompatibility

    Part of Molecular biology and evolution, p. 2-15, 2021.

    Open access
  • Glaros, Vassilis; Rauschmeier, Rene; Artemov, Artem, V; Reinhardt, Annika et al.

    Limited access to antigen drives generation of early B cell memory while restraining the plasmablast response

    Part of Immunity, p. 2005-+, 2021.

    Open access
  • Pecnerová, Patrícia; Díez-del-Molino, David; van der Valk, Tom; Dehasque, Marianne et al.

    Mammuthus sp. (Early and Middle Pleistocene Mammoths)

    Part of Trends in Genetics, p. 682-683, 2021.

    Open access
  • Arendt, Maja Louise; Ambrosen, Aime; Fall, Tove; Kierczak, Marcin et al.

    The ABCC4 gene is associated with pyometra in golden retriever dogs

    Part of Scientific Reports, 2021.

    Open access
  • Kang, Seungho; Tice, Alexander K.; Stairs, Courtney W.; Jones, Robert E. et al.

    The integrin-mediated adhesive complex in the ancestor of animals, fungi, and amoebae

    Part of Current Biology, p. 3073-3085.e3, 2021.

  • Zarsky, Vojtech; Klimes, Vladimir; Paces, Jan; Vlcek, Cestmir et al.

    The Mastigamoeba balamuthi Genome and the Nature of the Free-Living Ancestor of Entamoeba

    Part of Molecular biology and evolution, p. 2240-2259, 2021.

    Open access
  • Strawbridge, Rona J.; Johnston, Keira J. A.; Bailey, Mark E. S.; Baldassarre, Damiano et al.

    The overlap of genetic susceptibility to schizophrenia and cardiometabolic disease can be used to identify metabolically different groups of individuals

    Part of Scientific Reports, 2021.

    Open access
  • Seeger, Christian; Dyrhage, Karl; Mahajan, Mayank; Odelgard, Anna et al.

    The Subcellular Proteome of a Planctomycetes Bacterium Shows That Newly Evolved Proteins Have Distinct Fractionation Patterns

    Part of Frontiers in Microbiology, 2021.

    Open access
  • Chen, Ji; Gustafsson, Stefan; Sennblad, Bengt; Lind, Lars et al.

    The trans-ancestral genomic architecture of glycemic traits

    Part of Nature Genetics, p. 840-+, 2021.

  • Mazzurana, Luca; Czarnewski, Paulo; Jonsson, Viktor; Wigge, Leif et al.

    Tissue-specific transcriptional imprinting and heterogeneity in human innate lymphoid cells revealed by full-length single-cell RNA-sequencing

    Part of Cell Research, p. 554-568, 2021.

    Open access
  • Huang, Zhaobin; Petersen, Jillian M.; Martijn, Joran; Ettema, Thijs J. G. et al.

    A novel alphaproteobacterium with a small genome identified from the digestive gland of multiple species of abalone

    Part of Environmental Microbiology Reports, p. 387-395, 2020.

  • Svensson, Daniel; Rentoft, Matilda; Dahlin, Anna M.; Lundholm, Emma et al.

    A whole-genome sequenced control population in northern Sweden reveals subregional genetic differences

    Part of PLOS ONE, 2020.

    Open access
  • Onsbring, Henning; Tice, Alexander K.; Barton, Brandon T.; Brown, Matthew W. et al.

    An efficient single-cell transcriptomics workflow for microbial eukaryotes benchmarked on Giardia intestinalis cells

    Part of BMC Genomics, 2020.

    Open access
  • Garnica, Sigisfredo; Rosenstein, Ronja; Schön, Max Emil

    Belowground fungal community diversity, composition and ecological functionality associated with winter wheat in conventional and organic agricultural systems

    Part of PeerJ, 2020.

    Open access
  • Sjöberg, Susanne; Stairs, Courtney; Allard, Bert; Hallberg, Rolf et al.

    Bubble biofilm: Bacterial colonization of air-air interface

    Part of Biofilm, 2020.

    Open access
  • Montoliu-Nerin, Merce; Sanchez-Garcia, Marisol; Bergin, Claudia; Grabherr, Manfred et al.

    Building de novo reference genome assemblies of complex eukaryotic microorganisms from single nuclei

    Part of Scientific Reports, 2020.

    Open access
  • Stairs, Courtney W.; Dharamshi, Jennah; Tamarit, Daniel; Eme, Laura et al.

    Chlamydial contribution to anaerobic metabolism during eukaryotic evolution

    Part of Science Advances, 2020.

    Open access
  • Hosseini, Sara; Meunier, Cécile; Nguyen, Diem; Reimegård, Johan et al.

    Comparative analysis of genome-wide DNA methylation in Neurospora

    Part of Epigenetics, p. 972-987, 2020.

    Open access
  • Reysenbach, Anna-Louise; St John, Emily; Meneghin, Jennifer; Flores, Gilberto E. et al.

    Complex subsurface hydrothermal fluid mixing at a submarine arc volcano supports distinct and highly diverse microbial communities

    Part of Proceedings of the National Academy of Sciences of the United States of America, p. 32627-32638, 2020.

    Open access
  • Lewis, William H; Lind, Anders E.; Sendra, Kacper M.; Onsbring Gustafson, Henning et al.

    Convergent Evolution of Hydrogenosomes from Mitochondria by Gene Transfer and Loss

    Part of Molecular biology and evolution, p. 524-539, 2020.

    Open access
  • Mahajan, Mayank; Seeger, Christian; Yee, Benjamin; Andersson, Siv G. E.

    Evolutionary Remodeling of the Cell Envelope in Bacteria of the Planctomycetes Phylum

    Part of Genome Biology and Evolution, p. 1528-1548, 2020.

    Open access
  • Almeida, Pedro; Proux-Wera, Estelle; Churcher, Allison; Soler, Lucile et al.

    Genome assembly of the basket willow, Salix viminalis, reveals earliest stages of sex chromosome expansion

    Part of BMC Biology, 2020.

    Open access
  • Martijn, Joran; Schön, Max Emil; Lind, Anders E.; Vosseberg, Julian et al.

    Hikarchaeia demonstrate an intermediate stage in the methanogen-to-halophile transition

    Part of Nature Communications, 2020.

    Open access
  • Halvorsen, Matthew; Huh, Ruth; Oskolkov, Nikolay; Wen, Jia et al.

    Increased burden of ultra-rare structural variants localizing to boundaries of topologically associated domains in schizophrenia

    Part of Nature Communications, 2020.

    Open access
  • Dharamshi, Jennah E.; Tamarit, Daniel; Eme, Laura; Stairs, Courtney W. et al.

    Marine Sediments Illuminate Chlamydiae Diversity and Evolution

    Part of Current Biology, p. 1032-1048.e7, 2020.

  • Jimenez-Gonzalez, Alejandro; Andersson, Jan O.

    Metabolic reconstruction elucidates the lifestyle of the last Diplomonadida common ancestor

    Part of MSYSTEMS, 2020.

  • Sjöberg, Susanne; Stairs, Courtney W.; Allard, Bert; Homa, Felix et al.

    Microbiomes in a manganese oxide producing ecosystem in the Ytterby mine, Sweden: impact on metal mobility

    Part of FEMS Microbiology Ecology, 2020.

    Open access
  • Morrow, Jennifer L.; Schneider, Daniela, I; Klasson, Lisa; Janitz, Caroline et al.

    Parallel Sequencing of Wolbachia wCer2 from Donor and Novel Hosts Reveals Multiple Incompatibility Factors and Genome Stability after Host Transfers

    Part of Genome Biology and Evolution, p. 720-735, 2020.

    Open access
  • Mahajan, Mayank; Yee, Benjamin; Hägglund, Emil; Guy, Lionel et al.

    Paralogization and New Protein Architectures in Planctomycetes Bacteria with Complex Cell Structures

    Part of Molecular biology and evolution, p. 1020-1040, 2020.

  • Schön, Max Emil; Eme, Laura; Ettema, Thijs J. G.

    PhyloMagnet: fast and accurate screening of short-read meta-omics data using gene-centric phylogenetics

    Part of Bioinformatics, p. 1718-1724, 2020.

    Open access
  • Lord, Edana; Dussex, Nicolas; Kierczak, Marcin; Diez-del-Molino, David et al.

    Pre-extinction Demographic Stability and Genomic Signatures of Adaptation in the Woolly Rhinoceros

    Part of Current Biology, p. 3871-3879, 2020.

    Open access
  • Klimovich, Alexander; Giacomello, Stefania; Björklund, Åsa; Faure, Louis et al.

    Prototypical pacemaker neurons interact with the resident microbiota

    Part of Proceedings of the National Academy of Sciences of the United States of America, p. 17854-17863, 2020.

    Open access
  • Nordlund, Jessica; Marincevic-Zuniga, Yanara; Cavelier, Lucia; Raine, Amanda et al.

    Refined detection and phasing of structural aberrations in pediatric acute lymphoblastic leukemia by linked-read whole-genome sequencing

    Part of Scientific Reports, 2020.

    Open access
  • Tamarit, Daniel; Andersson, Siv G. E.

    Rethinking microbial symbioses

    Part of FEMS Microbiology Letters, 2020.

    Open access
  • Murray, Alison E.; Freudenstein, John; Gribaldo, Simonetta; Hatzenpichler, Roland et al.

    Roadmap for naming uncultivated Archaea and Bacteria

    Part of Nature Microbiology, p. 987-994, 2020.

    Open access