Publications

A full-length infectious cDNA clone of a dsRNA totivirus-like virus

Wang, Han; Maia, Filipe R.N.C.; Okamoto, Kenta

Part of Virology, p. 127-133, 2022.

DOI for A full-length infectious cDNA clone of a dsRNA totivirus-like virus Download full text (pdf) of A full-length infectious cDNA clone of a dsRNA totivirus-like virus

Unsupervised learning approaches to characterizing heterogeneous samples using X-ray single-particle imaging

Zhuang, Yulong; Awel, Salah; Barty, Anton; Bean, Richard et al.

Part of IUCrJ, p. 204-214, 2022.

DOI for Unsupervised learning approaches to characterizing heterogeneous samples using X-ray single-particle imaging Download full text (pdf) of Unsupervised learning approaches to characterizing heterogeneous samples using X-ray single-particle imaging

Noise reduction and mask removal neural network for X-ray single-particle imaging

Bellisario, Alfredo; Maia, Filipe; Ekeberg, Tomas

Part of Journal of applied crystallography, p. 122-132, 2022.

DOI for Noise reduction and mask removal neural network for X-ray single-particle imaging Download full text (pdf) of Noise reduction and mask removal neural network for X-ray single-particle imaging

3D diffractive imaging of nanoparticle ensembles using an x-ray laser

Ayyer, Kartik; Xavier, P. Lourdu; Bielecki, Johan; Shen, Zhou et al.

Part of Optica, p. 15-23, 2021.

DOI for 3D diffractive imaging of nanoparticle ensembles using an x-ray laser Download full text (pdf) of 3D diffractive imaging of nanoparticle ensembles using an x-ray laser

Introduction to the special issue on Ptychography: software and technical developments

Marchesini, Stefano; Shapiro, David; Maia, Filipe

Part of Journal of applied crystallography, p. 384-385, 2021.

DOI for Introduction to the special issue on Ptychography: software and technical developments

Ptychographic wavefront characterization for single-particle imaging at x-ray lasers

Daurer, Benedikt J.; Sala, Simone; Hantke, Max; Reddy, Hemanth K.N. et al.

Part of Optica, p. 551-562, 2021.

DOI for Ptychographic wavefront characterization for single-particle imaging at x-ray lasers Download full text (pdf) of Ptychographic wavefront characterization for single-particle imaging at x-ray lasers

Three-Dimensional Coherent Bragg Imaging of Rotating Nanoparticles

Björling, Alexander; Marcal, Lucas A. B.; Solla-Gullon, Jose; Wallentin, Jesper et al.

Part of Physical Review Letters, 2020.

DOI for Three-Dimensional Coherent Bragg Imaging of Rotating Nanoparticles Download full text (pdf) of Three-Dimensional Coherent Bragg Imaging of Rotating Nanoparticles

Diffraction data from aerosolized Coliphage PR772 virus particles imaged with the Linac Coherent Light Source

Li, Haoyuan; Nazari, Reza; Abbey, Brian; Alvarez, Roberto et al.

Part of Scientific Data, 2020.

DOI for Diffraction data from aerosolized Coliphage PR772 virus particles imaged with the Linac Coherent Light Source Download full text (pdf) of Diffraction data from aerosolized Coliphage PR772 virus particles imaged with the Linac Coherent Light Source

Acquired Functional Capsid Structures in Metazoan Totivirus-like dsRNA Virus

Okamoto, Kenta; Ferreira, Ricardo J.; Larsson, Daniel S D; Maia, Filipe R.N.C. et al.

Part of Structure, p. 888-+, 2020.

DOI for Acquired Functional Capsid Structures in Metazoan Totivirus-like dsRNA Virus

Pulse-to-pulse wavefront sensing at free-electron lasers using ptychography

Sala, Simone; Daurer, Benedikt J.; Odstrcil, Michal; Capotondi, Flavio et al.

Part of Journal of applied crystallography, p. 949-956, 2020.

DOI for Pulse-to-pulse wavefront sensing at free-electron lasers using ptychography Download full text (pdf) of Pulse-to-pulse wavefront sensing at free-electron lasers using ptychography

Perspectives on single particle imaging with x rays at the advent of high repetition rate x-ray free electron laser sources

Bielecki, Johan; Maia, Filipe R. N. C.; Mancuso, Adrian P.

Part of Structural Dynamics, 2020.

DOI for Perspectives on single particle imaging with x rays at the advent of high repetition rate x-ray free electron laser sources Download full text (pdf) of Perspectives on single particle imaging with x rays at the advent of high repetition rate x-ray free electron laser sources

Megahertz single-particle imaging at the European XFEL

Sobolev, Egor; Zolotarev, Serguey; Giewekemeyer, Klaus; Bielecki, Johan et al.

Part of Communications Physics, 2020.

DOI for Megahertz single-particle imaging at the European XFEL Download full text (pdf) of Megahertz single-particle imaging at the European XFEL

The role of transient resonances for ultra-fast imaging of single sucrose nanoclusters

Ho, Phay J.; Daurer, Benedikt J.; Hantke, Max; Bielecki, Johan et al.

Part of Nature Communications, 2020.

DOI for The role of transient resonances for ultra-fast imaging of single sucrose nanoclusters Download full text (pdf) of The role of transient resonances for ultra-fast imaging of single sucrose nanoclusters

Evaluation of serial crystallographic structure determination within megahertz pulse trains

Yefanov, Oleksandr; Oberthuer, Dominik; Bean, Richard; Wiedorn, Max O. et al.

Part of Structural Dynamics, 2019.

DOI for Evaluation of serial crystallographic structure determination within megahertz pulse trains Download full text (pdf) of Evaluation of serial crystallographic structure determination within megahertz pulse trains

Electrospray sample injection for single-particle imaging with x-ray lasers

Bielecki, Johan; Hantke, Max F.; Daurer, Benedikt J.; Reddy, Hemanth K. N. et al.

Part of Science Advances, 2019.

DOI for Electrospray sample injection for single-particle imaging with x-ray lasers

Cryo-EM structure of a Marseilleviridae virus particle reveals a large internal microassembly

Okamoto, Kenta; Miyazaki, Naoyuki; Reddy, Hemanth K.N.; Hantke, Max F et al.

Part of Virology, p. 239-245, 2018.

DOI for Cryo-EM structure of a Marseilleviridae virus particle reveals a large internal microassembly

Rayleigh-scattering microscopy for tracking and sizing nanoparticles in focused aerosol beams

Hantke, Max Felix; Bielecki, Johan; Kulyk, Olena; Westphal, Daniel et al.

Part of IUCrJ, p. 673-680, 2018.

DOI for Rayleigh-scattering microscopy for tracking and sizing nanoparticles in focused aerosol beams Download full text (pdf) of Rayleigh-scattering microscopy for tracking and sizing nanoparticles in focused aerosol beams

Single-particle imaging without symmetry constraints at an X-ray free-electron laser

Rose, Max; Bobkov, Sergey; Ayyer, Kartik; Kurta, Ruslan P. et al.

Part of IUCrJ, p. 727-736, 2018.

DOI for Single-particle imaging without symmetry constraints at an X-ray free-electron laser Download full text (pdf) of Single-particle imaging without symmetry constraints at an X-ray free-electron laser

A statistical approach to detect protein complexes at X-ray free electron laser facilities

Pietrini, Alberto; Bielecki, Johan; Timneanu, Nicusor; Hantke, Max F. et al.

Part of Communications Physics, p. 92:1-11, 2018.

DOI for A statistical approach to detect protein complexes at X-ray free electron laser facilities

Megahertz serial crystallography

Wiedorn, Max O.; Oberthuer, Dominik; Bean, Richard; Schubert, Robin et al.

Part of Nature Communications, 2018.

DOI for Megahertz serial crystallography Download full text (pdf) of Megahertz serial crystallography

Considerations for three-dimensional image reconstruction from experimental data in coherent diffractive imaging

Lundholm, Ida V.; Sellberg, Jonas A.; Ekeberg, Tomas; Hantke, Max F. et al.

Part of IUCrJ, p. 531-541, 2018.

DOI for Considerations for three-dimensional image reconstruction from experimental data in coherent diffractive imaging

Three-dimensional localization of nanoscale battery reactions using soft X-ray tomography

Yu, Young-Sang; Farmand, Maryam; Kim, Chunjoong; Liu, Yijin et al.

Part of Nature Communications, 2018.

DOI for Three-dimensional localization of nanoscale battery reactions using soft X-ray tomography Download full text (pdf) of Three-dimensional localization of nanoscale battery reactions using soft X-ray tomography

Ptychographic imaging for the characterization of X-ray free-electron laser beams

Sala, S.; Daurer, B. J.; Hantke, M. F.; Ekeberg, Tomas et al.

Part of X-RAY MICROSCOPY CONFERENCE 2016 (XRM 2016), 2017.

DOI for Ptychographic imaging for the characterization of X-ray free-electron laser beams Download full text (pdf) of Ptychographic imaging for the characterization of X-ray free-electron laser beams

Femtosecond X-ray Fourier holography imaging of free-flying nanoparticles

Gorkhover, Tais; Ulmer, Anatoli; Ferguson, Ken; Bucher, Max et al.

Part of Nature Photonics, p. 150-153, 2018.

DOI for Femtosecond X-ray Fourier holography imaging of free-flying nanoparticles

Coherent diffraction of single Rice Dwarf Virus particles using soft X-rays at the Linac Coherent Light Source

Munke, Anna; van der Schot, Gijs; Maia, Filipe; Ekeberg, Tomas et al.

Part of Nature Scientific Data, 2018.

Structural variability and complexity of the giant Pithovirus sibericum particle revealed by high-voltage electron cryo-tomography and energy-filtered electron cryo-microscopy

Okamoto, Kenta; Miyazaki, Naoyuki; Song, Chihong; Maia, Filipe et al.

Part of Scientific Reports, 2017.

DOI for Structural variability and complexity of the giant Pithovirus sibericum particle revealed by high-voltage electron cryo-tomography and energy-filtered electron cryo-microscopy Download full text (pdf) of Structural variability and complexity of the giant Pithovirus sibericum particle revealed by high-voltage electron cryo-tomography and energy-filtered electron cryo-microscopy

Experimental strategies for imaging bioparticles with femtosecond hard X-ray pulses

Daurer, Benedikt J.; Okamoto, Kenta; Bielecki, Johan; Maia, Filipe R. N. C. et al.

Part of IUCrJ, p. 251-262, 2017.

DOI for Experimental strategies for imaging bioparticles with femtosecond hard X-ray pulses

Wavefront sensing of individual XFEL pulses using ptychography

Daurer, Benedikt J; Simone, Sala; Hantke, Max; Reddy, Hemanth et al.

Correlations in scattered X-ray laser pulses reveal nanoscale structural features of viruses

Kurta, Ruslan P.; Donatelli, Jeffrey J.; Yoon, Chun Hong; Berntsen, Peter et al.

Part of Physical Review Letters, p. 158102:1-7, 2017.

DOI for Correlations in scattered X-ray laser pulses reveal nanoscale structural features of viruses

Coherent soft X-ray diffraction imaging of Coliphage PR772 at the Linac coherent light source

Reddy, Hemanth K. N.; Yoon, Chun Hong; Aquila, Andrew; Awel, Salah et al.

Part of Scientific Data, 2017.

DOI for Coherent soft X-ray diffraction imaging of Coliphage PR772 at the Linac coherent light source

Near-edge X-ray refraction fine structure microscopy

Farmand, Maryam; Celestre, Richard; Denes, Peter; Kilcoyne, A. L. David et al.

Part of Applied Physics Letters, 2017.

DOI for Near-edge X-ray refraction fine structure microscopy

Nanosurveyor: a framework for real-time data processing

Daurer, Benedikt J.; Krishnan, Hari; Perciano, Talita; Rocha Neves Couto Maia, Filipe et al.

Part of Advanced Structural and Chemical Imaging, 2017.

DOI for Nanosurveyor: a framework for real-time data processing Download full text (pdf) of Nanosurveyor: a framework for real-time data processing

Single-shot diffraction data from the Mimivirus particle using an X-ray free-electron laser

Ekeberg, Tomas; Svenda, Martin; Seibert, M. Marvin; Abergel, Chantal et al.

Part of Scientific Data, 2016.

DOI for Single-shot diffraction data from the Mimivirus particle using an X-ray free-electron laser Download full text (pdf) of Single-shot diffraction data from the Mimivirus particle using an X-ray free-electron laser

The trickle before the torrent-diffraction data from X-ray lasers

Maia, Filipe R. N. C.; Hajdu, Janos

Part of Scientific Data, 2016.

DOI for The trickle before the torrent-diffraction data from X-ray lasers Download full text (pdf) of The trickle before the torrent-diffraction data from X-ray lasers

Real-Time Data-Intensive Computing

Parkinson, Dilworth Y.; Beattie, Keith; Chen, Xian; Correa, Joaquin et al.

Part of Proceedings Of The 12Th International Conference On Synchrotron Radiation Instrumentation (SRI2015), 2016.

DOI for Real-Time Data-Intensive Computing

CCP-FEL: a collection of computer programs for free-electron laser research

Maia, Filipe R. N. C.; White, Thomas A.; Loh, N. Duane; Hajdu, Janos

Part of Journal of applied crystallography, p. 1117-1120, 2016.

DOI for CCP-FEL: a collection of computer programs for free-electron laser research

The infectious particle of insect-borne totivirus-like Omono River virus has raised ridges and lacks fibre complexes

Okamoto, Kenta; Miyazaki, Naoyuki; Larsson, Daniel S. D.; Kobayashi, Daisuke et al.

Part of Scientific Reports, 2016.

DOI for The infectious particle of insect-borne totivirus-like Omono River virus has raised ridges and lacks fibre complexes Download full text (pdf) of The infectious particle of insect-borne totivirus-like Omono River virus has raised ridges and lacks fibre complexes

A data set from flash X-ray imaging of carboxysomes

Hantke, Max F.; Hasse, Dirk; Ekeberg, Tomas; John, Katja et al.

Part of Scientific Data, 2016.

DOI for A data set from flash X-ray imaging of carboxysomes Download full text (pdf) of A data set from flash X-ray imaging of carboxysomes

Coherent diffraction of single Rice Dwarf virus particles using hard X-rays at the Linac Coherent Light Source

Munke, Anna; Andreasson, Jakob; Aquila, Andrew; Awel, Salah et al.

Part of Scientific Data, p. 160064:1-12, 2016.

DOI for Coherent diffraction of single Rice Dwarf virus particles using hard X-rays at the Linac Coherent Light Source

Condor: a simulation tool for flash X-ray imaging

Hantke, Max F.; Ekeberg, Tomas; Maia, Filipe R. N. C.

Part of Journal of applied crystallography, p. 1356-1362, 2016.

DOI for Condor: a simulation tool for flash X-ray imaging Download full text (pdf) of Condor: a simulation tool for flash X-ray imaging

Open data set of live cyanobacterial cells imaged using an X-ray laser

van der Schot, Gijs; Svenda, Martin; Maia, Filipe R.N.C.; Hantke, Max F. et al.

Part of Scientific Data, 2016.

DOI for Open data set of live cyanobacterial cells imaged using an X-ray laser Download full text (pdf) of Open data set of live cyanobacterial cells imaged using an X-ray laser

SHARP: a distributed GPU-based ptychographic solver

Marchesini, Stefano; Krishnan, Hari; Daurer, Benedikt J.; Shapiro, David A. et al.

Part of Journal of applied crystallography, p. 1245-1252, 2016.

DOI for SHARP: a distributed GPU-based ptychographic solver

Unsupervised classification of single-particle X-ray diffraction snapshots by spectral clustering.

Yoon, Chun Hong; Schwander, Peter; Abergel, Chantal; Andersson, Inger et al.

Part of Optics Express, p. 15929-15936, 2011.

Hummingbird: monitoring and analyzing flash X-ray imaging experiments in real time

Daurer, Benedikt J.; Hantke, Max F.; Nettelblad, Carl; Maia, Filipe R. N. C.

Part of Journal of applied crystallography, p. 1042-1047, 2016.

DOI for Hummingbird: monitoring and analyzing flash X-ray imaging experiments in real time

Data publication with the structural biology data grid supports live analysis

Meyer, Peter A.; Socias, Stephanie; Key, Jason; Ransey, Elizabeth et al.

Part of Nature Communications, 2016.

DOI for Data publication with the structural biology data grid supports live analysis Download full text (pdf) of Data publication with the structural biology data grid supports live analysis

The linac coherent light source single particle imaging road map

Aquila, A.; Barty, A.; Bostedt, C.; Boutet, S. et al.

Part of Structural Dynamics, 2015.

DOI for The linac coherent light source single particle imaging road map

Three-dimensional reconstruction of the giant mimivirus particle with an X-ray free-electron laser

Ekeberg, Tomas; Svenda, Martin; Abergel, Chantal; Maia, Filipe R. N. C. et al.

Part of Physical Review Letters, p. 098102:1-6, 2015.

DOI for Three-dimensional reconstruction of the giant mimivirus particle with an X-ray free-electron laser Download full text (pdf) of Three-dimensional reconstruction of the giant mimivirus particle with an X-ray free-electron laser

Imaging single cells in a beam of live cyanobacteria with an X-ray laser

van der Schot, Gijs; Svenda, Martin; Maia, Filipe R. N. C.; Hantke, Max et al.

Part of Nature Communications, 2015.

DOI for Imaging single cells in a beam of live cyanobacteria with an X-ray laser

Explosion dynamics of sucrose nanospheres monitored by time of flight spectrometry and coherent diffractive imaging at the split-and-delay beam line of the FLASH soft X-ray laser

Rath, Asawari D.; Timneanu, Nicusor; Maia, Filipe R. N. C.; Bielecki, Johan et al.

Part of Optics Express, p. 28914-28925, 2014.

DOI for Explosion dynamics of sucrose nanospheres monitored by time of flight spectrometry and coherent diffractive imaging at the split-and-delay beam line of the FLASH soft X-ray laser

High-throughput imaging of heterogeneous cell organelles with an X-ray laser

Hantke, Max F.; Hasse, Dirk; Maia, Filipe R. N. C.; Ekeberg, Tomas et al.

Part of Nature Photonics, p. 943-949, 2014.

DOI for High-throughput imaging of heterogeneous cell organelles with an X-ray laser