Publications

  • Doerr, Anne; Foschepoth, David; Forster, Anthony C.; Danelon, Christophe

    In vitro synthesis of 32 translation-factor proteins from a single template reveals impaired ribosomal processivity

    Part of Scientific Reports, 2021.

    Open access
  • Aguirre Rivera, Javier; Larsson, Jimmy; Volkov, Ivan; Seefeldt, A. Carolin et al.

    Real-time measurements of aminoglycoside effects on protein synthesis in live cells

    Part of Proceedings of the National Academy of Sciences of the United States of America, 2021.

    Open access
  • Abdalaal, Hind; Pundir, Shreya; Ge, Xueliang; Sanyal, Suparna et al.

    Collateral toxicity limits the evolution of bacterial Release Factor 2 towards total omnipotence

    Part of Molecular biology and evolution, p. 2918-2930, 2020.

    Open access
  • Marklund, Emil; van Oosten, Brad; Mao, Guanzhong; Amselem, Elias et al.

    DNA surface exploration and operator bypassing during target search

    Part of Nature, p. 858-+, 2020.

  • Wang, Li; Wanqiu, Li; Ge, Xueliang; Kaige, Yan et al.

    Loss of a single methylation in 23S rRNA delays 50S assembly at multiple late stages and impairs translation initiation and elongation

    Part of Proceedings of the National Academy of Sciences of the United States of America, p. 15609-15619, 2020.

  • Bao, Letian; Menon, P. Navaneeth K.; Liljeruhm, Josefine; Forster, Anthony C.

    Overcoming chromoprotein limitations by engineering a red fluorescent protein

    Part of Analytical Biochemistry, 2020.

    Open access
  • Pang, Yanhong; Kovachev, Petar Stefanov; Sanyal, Suparna

    Ribosomal RNA Modulates Aggregation of thePodosporaPrion Protein HET-s

    Part of International Journal of Molecular Sciences, 2020.

    Open access
  • Bergfors, Terese; Majumdar, Soneya

    Screening cells for crystals: a synergistic approach

    Part of Journal of applied crystallography, p. 1414-1415, 2020.

    Open access
  • Chen, Yu-Xiang; Xu, Zhi-Yu; Ge, Xueliang; Hong, Jia-Yao et al.

    Selective translation by alternative bacterial ribosomes

    Part of Proceedings of the National Academy of Sciences of the United States of America, p. 19487-19496, 2020.

    Open access
  • Behra, Phani Rama Krishna; Pettersson, Fredrik; Das, Sarbashis; Dasgupta, Santanu et al.

    Comparative genomics of Mycobacterium mucogenicum and Mycobacterium neoaurum clade members emphasizing tRNA and non-coding RNA

    Part of BMC Evolutionary Biology, 2019.

    Open access
  • Cook, Naomi L.; Pjanic, Milos; Emmerich, Andrew G.; Rao, Abhiram S. et al.

    CRISPR-Cas9-mediated knockout of SPRY2 in human hepatocytes leads to increased glucose uptake and lipid droplet accumulation

    Part of BMC Endocrine Disorders, 2019.

    Open access
  • Behra, Phani Rama Krishna; Das, Sarbashis; Pettersson, B. M. Fredrik; Shirreff, Lisa et al.

    Extended insight into the Mycobacterium chelonae-abscessus complex through whole genome sequencing of Mycobacterium salmoniphilum outbreak and Mycobacterium salmoniphilum-like strains

    Part of Scientific Reports, 2019.

    Open access
  • Koshla, Oksana; Yushchuk, Oleksandr; Stash, Iryna; Dacyuk, Yuriy et al.

    Gene miaA for post-transcriptional modification of tRNAXXA is important for morphological and metabolic differentiation in Streptomyces

    Part of Molecular Microbiology, p. 249-265, 2019.

  • Ge, Xueliang; Oliveira, Ana; Hjort, Karin; Bergfors, Terese et al.

    Inhibition of translation termination by small molecules targeting ribosomal release factors

    Part of Scientific Reports, 2019.

    Open access
  • Behra, Phani Rama Krishna; Pettersson, Fredrik; Ramesh, Malavika; Dasgupta, Santanu et al.

    Insight into the biology of Mycobacterium mucogenicum and Mycobacterium neoaurum Glade members

    Part of Scientific Reports, 2019.

    Open access
  • Liljeruhm, Josefine; Wang, Jinfan; Kwiatkowski, Marek; Sabari, Samudra et al.

    Kinetics of D-amino acid incorporation in translation

    Part of ACS Chemical Biology, p. 204-213, 2019.

  • Zukher, Inna; Pavlov, Michael; Tsibulskaya, Darya; Kulikovsky, Alexey et al.

    Reiterative Synthesis by the Ribosome and Recognition of the N-Terminal Formyl Group by Biosynthetic Machinery Contribute to Evolutionary Conservation of the Length of Antibiotic Microcin C Peptide Precursor

    Part of mBio, 2019.

    Open access
  • Kovachev, Petar Stefanov; Gomes, Mariana P. B.; Cordeiro, Yraima; Ferreira, Natalia C. et al.

    RNA modulates aggregation of the recombinant mammalian prion protein by direct interaction

    Part of Scientific Reports, 2019.

    Open access
  • Holm, Mikael; Mandava, Chandra Sekhar; Ehrenberg, Måns; Sanyal, Suparna

    The mechanism of error induction by the antibiotic viomycin provides insight into the fidelity mechanism of translation

    Part of eLIFE, 2019.

    Open access
  • Fu, Ziao; Indrisiunaite, Gabriele; Kaledhonkar, Sandip; Shah, Binita et al.

    The structural basis for release-factor activation during translation termination revealed by time-resolved cryogenic electron microscopy

    Part of Nature Communications, 2019.

    Open access
  • Das, Sarbashis; Frisk, Christoffer; Eriksson, Maria J.; Walentinsson, Anna et al.

    Transcriptomics of cardiac biopsies reveals differences in patients with or without diagnostic parameters for heart failure with preserved ejection fraction

    Part of Scientific Reports, 2019.

    Open access
  • Choi, Junhong; Indrisiunaite, Gabriele; DeMirci, Hasan; Leong, Ka-Weng et al.

    2'-O-methylation in mRNA disrupts tRNA decoding during translation elongation

    Part of Nature Structural & Molecular Biology, p. 208-216, 2018.

  • Zhang, Jingji; Pavlov, Michael; Ehrenberg, Måns

    Accuracy of genetic code translation and its orthogonal corruption by aminoglycosides and Mg2+ ions

    Part of Nucleic Acids Research, p. 1362-1374, 2018.

    Open access
  • Moriou, Céline; Da Silva, Adilson D.; Vianelli Prado, Marcos Joel; Denhez, Clément et al.

    C2 '-F Stereoconfiguration As a Puckering Switch for Base Stacking at the Dinucleotide Level

    Part of Journal of Organic Chemistry, p. 2473-2478, 2018.

  • Mishra, Abhishek Kumar; Morgon, Nelson Henrique; Sanyal, Suparna; de Souza, Aguinaldo Robinson et al.

    Catalytic O- to N-Alkyl Migratory Rearrangement: Transition Metal-Free Direct and Tandem Routes to N-Alkylated Pyridones and Benzothiazolones

    Part of Advanced Synthesis and Catalysis, p. 3930-3939, 2018.

  • Goronzy, I. N.; Rawle, R. J.; Boxer, S. G.; Kasson, Peter M.

    Cholesterol enhances influenza binding avidity by controlling nanoscale receptor clustering

    Part of Chemical Science, p. 2340-2347, 2018.

    Open access
  • Ge, Xueliang; Mandava, Chandra Sekhar; Lind, Christoffer; Åqvist, Johan et al.

    Complementary charge-based interaction between the ribosomal-stalk protein L7/12 and IF2 is the key to rapid subunit association

    Part of Proceedings of the National Academy of Sciences of the United States of America, p. 4649-4654, 2018.

  • Mao, Guanzhong; Srivastava, Abhishek S.; Wu, Shiying; Kosek, David et al.

    Critical domain interactions for type A RNase P RNA catalysis with and without the specificity domain

    Part of PLoS ONE, 2018.

    Open access
  • Fislage, Marcus; Zhang, Jingji; Brown, Zuben Patrick; Mandava, Chandra Sekhar et al.

    Cryo-EM shows stages of initial codon selection on the ribosome by aa-tRNA in ternary complex with GTP and the GTPase-deficient EF-Tu(H84A)

    Part of Nucleic Acids Research, p. 5861-5874, 2018.

    Open access
  • Liljeruhm, Josefine; Funk, Saskia K.; Tietscher, Sandra; Edlund, Anders D. et al.

    Engineering a palette of eukaryotic chromoproteins for bacterial synthetic biology

    Part of Journal of Biological Engineering, 2018.

    Open access
  • Das, Sarbashis; Pettersson, B. M. Fredrik; Behra, Phani Rama Krishna; Mallick, Amrita et al.

    Extensive genomic diversity among Mycobacterium marinum strains revealed by whole genome sequencing

    Part of Scientific Reports, 2018.

    Open access
  • Choi, Junhong; Indrisiunaite, Gabriele; DeMirci, Hasan; Ieong, Ka-Weng et al.

    How 2 '-O-Methylation in mRNA Disrupts tRNA Decoding during Translation Elongation

    Part of Biophysical Journal, p. 592A-592A, 2018.

  • Kipper, Kalle; Eremina, Nadja; Marklund, Emil; Tubasum, Sumera et al.

    Structure-guided approach to site-specific fluorophore labeling of the lac repressor LacI

    Part of PLoS ONE, 2018.

    Open access
  • Togtema, Melissa; Jackson, Robert; Grochowski, Jessica; Villa, Peter L. et al.

    Synthetic siRNA targeting human papillomavirus 16 E6: a perspective on in vitro nanotherapeutic approaches

    Part of Nanomedicine, p. 455-474, 2018.

  • Caban, Kelvin; Pavlov, Michael; Kaledhonkar, Sandip; Fu, Ziao et al.

    The Structural Basis for Initiation Factor 2 Activation during Translation Initiation

    Part of Biophysical Journal, p. 593A-593A, 2018.

  • Volkov, Ivan; Lindén, Martin; Aguirre, Javier; Ieong, Ka-Weng et al.

    tRNA tracking for direct measurements of protein synthesis kinetics in live cells

    Part of Nature Chemical Biology, p. 618-626, 2018.

  • Harish, Ajith

    What is an archaeon and are the Archaea really unique?

    Part of PeerJ, 2018.

    Open access
  • Mellenius, Harriet; Ehrenberg, Måns

    Transcriptional accuracy modeling suggests two-step proofreading by RNA polymerase

    Part of Nucleic Acids Research, p. 11582-11593, 2017.

    Open access