Virtanen P*, Wäneskog M*, Koskiniemi S. Class II contact-dependent growth inhibition (CDI) systems allow for broad-range cross-species toxin delivery within the Enterobacteriaceae family. Mol Microbiol. 2019 Apr.

Michalska K, Quan Nhan D, Willett JLE, Stols LM, Eschenfeldt WH, Jones AM, Nguyen JY, Koskiniemi S, Low DA, Goulding CW, Joachimiak A, Hayes CS. Functional plasticity of antibacterial EndoU toxins. Mol Microbiol. 2018 Aug.

Wistrand-Yuen E, Knopp M, Hjort K, Koskiniemi S, Berg OG, Andersson DI.
Evolution of high-level resistance during low-level antibiotic exposure. Nat Commun. 2018 Apr.

Ghosh A*, Baltekin Ö*, Wäneskog M, Elkhalifa D, Hammarlöf DL, Elf J, Koskiniemi S.
Contact-dependent growth inhibition induces high levels of antibiotic-tolerant persister cells in clonal bacterial populations. EMBO J. 2018 May.

Amlinger L, Hoekzema M, Wagner EGH, Koskiniemi S, Lundgren M.
Fluorescent CRISPR Adaptation Reporter for rapid quantification of spacer acquisition. Sci Rep. 2017 Sep.

Ruhe ZC, Nguyen JY, Xiong J, Koskiniemi S, Beck CM, Perkins BR, Low DA, Hayes CS. CdiA Effectors Use Modular Receptor-Binding Domains To Recognize Target Bacteria. MBio. 2017 Mar 28;8(2). pii: e00290-17. doi: 10.1128/mBio.00290-17.

Koskiniemi S, Elf J. Arming the Neighborhood. Dev Cell. 2016 Oct 10;39(1):5-6. doi: 10.1016/j.devcel.2016.09.024.

Forsell J, Granlund M, Samuelsson L, Koskiniemi S, Edebro H, Evengård B. High occurrence of Blastocystis sp. subtypes 1-3 and Giardia intestinalis assemblage B among patients in Zanzibar, Tanzania. Parasit Vectors. 2016 Jun 29;9(1):370. doi: 10.1186/s13071-016-1637-8.

Forsell J, Koskiniemi S, Hedberg I, Edebro H, Evengård B, Granlund M. Evaluation of factors affecting real-time PCR performance for diagnosis of Entamoeba histolytica and Entamoeba dispar in clinical stool samples. J Med Microbiol. 2015 Sep;64(9):1053-62. doi: 10.1099/jmm.0.000129. Epub 2015 Jul 14.

Koskiniemi S, Garza-Sánchez F, Edman N, Chaudhuri S, Poole SJ, Manoil C, Hayes CS, Low DA. Genetic analysis of the CDI pathway from Burkholderia pseudomallei 1026b. PLoS One. 2015 Mar 18;10(3):e0120265. doi: 10.1371/journal.pone.0120265. eCollection 2015.

Edin A, Granholm S, Koskiniemi S, Allard A, Sjöstedt A, Johansson A. Development and laboratory evaluation of a real-time PCR assay for detecting viruses and bacteria of relevance for community-acquired pneumonia. J Mol Diagn. 2015 May;17(3):315-24. doi: 10.1016/j.jmoldx.2015.01.005. Epub 2015 Mar 13.

Koskiniemi S, Garza-Sánchez F, Sandegren L, Webb JS, Braaten BA, Poole SJ, Andersson DI, Hayes CS, Low DA. Selection of orphan Rhs toxin expression in evolved Salmonella enterica serovar Typhimurium. PLoS Genet. 2014 Mar 27;10(3): e1004255.

Hayes CS, Koskiniemi S, Ruhe ZC, Poole SJ and Low DA. Mechanisms and biological roles of contact-dependent growth inhibition (CDI) systems, Bacterial Pathogenesis, CSHL 2014 (Book Chapter).

Koskiniemi S, Gibbons HS, Sandegren L, Anwar N, Ouellette G, Broomall S, Karavis M, McGregor P, Liem A, Fochler E, McNew L, Rosenzweig CN, Rhen M, Skowronski EW, Andersson DI. Pathoadaptive mutations in Salmonella enterica isolated after serial passage in mice. PLoS One. 2013 Jul 25; 8(7): e70147.

Koskiniemi S, Lamoreux JG, Nikolakakis KC, t’Kint de Roodenbeke C, Kaplan MD, Low DA and Hayes CS. Rhs proteins from diverse bacteria mediate intercellular competition. Proc Natl Acad Sci USA. 2013 April 23: 110(17): 7032-7037.

Koskiniemi S, Sun S, Berg OG and Andersson DI. Selection driven gene loss in bacteria. PLOS Genetics 2012 Jun: 8(6).

Koskiniemi S, Pränting M, Gullberg E, Näsvall J and Andresson DI. Activation of cryptic aminoglycoside resistance in Salmonella enterica. Mol Microbiol, 2011 Jun; 80(6): 1464-78.

Hughes D, Koskiniemi S, Andersson DI. Biological roles of translesion synthesis DNA polymerases in eubacteria. Mol Micro 2010 Aug 1: 77(3): 540-8.

Koskiniemi S, Hughes D, Andersson DI. Effect of translesion DNA polymerases, endonucleasese and RpoS on mutation rates in Salmonella typhimurium. Genetics, 2010 July 185: 783-795.

Koskiniemi S, Andersson DI. Translesion DNA polymerases are required for spontaneous deletion formation in Salmonella typhimurium. Proc Natl Acad Sci USA. 2009 June 23; 106(25): 10248-53.

Nilsson AI, Koskiniemi S, Eriksson S, Kugelberg E, Hinton JC, Andersson DI. Bacterial genome size reduction by experimental evolution. Proc Natl Acad Sci USA. 2005 Aug 23; 102(34): 12112-6.