Publications

Rizvanovic A, Kjellin J, Söderbom F, Holmqvist E (2021). Saturation mutagenesis charts the functional landscape of Salmonella ProQ and reveals a gene regulatory function of its C-terminal domain. Nucleic Acids Res. 2021 Sep 27;49(17):9992-10006. doi: 10.1093/nar/gkab721.

Stenum TS, Holmqvist E (2021). CsrA enters Hfq's territory: Regulation of a base-pairing small RNA. Mol Microbiol. 2021 Jul 10. doi: 10.1111/mmi.14785.

Stenum TS, Kongstad M, Holmqvist E, Kallipolitis B, Svenningsen SL, Sørensen MA (2021). Three Ribosomal Operons of Escherichia coli Contain Genes Encoding Small RNAs That Interact With Hfq and CsrA in vitro. Front Microbiol. 2021 May 11;12:625585. doi: 10.3389/fmicb.2021.625585.

Andresen L, Martinez Burgo Y, Nilsson Zangelin J, Rizvanovic A, Holmqvist E (2020). The small toxic Salmonella protein TimP targets the cytoplasmic membrane and is repressed by the small RNA TimR. mBio. 11(6):e01659-20.

Wagner EGH, Holmqvist E (2020). The Length of a DNA T-Tract Modulates Expression of a Virulence-Regulating sRNA. Mol Cell. 80(2):175-177

Holmqvist E, Berggren S, Rizvanovic A (2020). RNA-binding activity and regulatory functions of the emerging sRNA-binding protein ProQ. Biochim Biophys Acta Gene Regul Mech. 1863(9).

Romilly C, Hoekzema M, Holmqvist E, Wagner EGH (2020) Small RNAs OmrA and OmrB promote class III flagellar gene expression by inhibiting the synthesis of anti-Sigma factor FlgM. RNA biology. doi: 10.1080/15476286.2020.1733801.

Hoekzema M, Romilly C, Holmqvist E, Wagner EGH (2019) Hfqdependent mRNA unfolding promotes sRNAbased inhibition of translation. EMBO J 38(7):e101199

Andresen L, Holmqvist E (2018) CLIP-seq in bacteria: Global recognition patterns of bacterial RNA-binding proteins. Methods Enzymol. 612:127-145

Holmqvist E, Vogel J (2018) RNA-binding proteins in bacteria. Nat Rev Microbiol 16(10):601-615

Holmqvist E, Li L, Bischler T, Barquist L, Vogel J (2018) Global maps of ProQ binding in vivo reveal target recognition via RNA structure and stability control at mRNA 3’ ends. Mol Cell 70(5):971-982

Holmqvist E, Wagner EGH (2017) Impact of bacterial sRNAs in stress responses. Biochem Soc Trans 45(6):1203-1212

Michaux C, Holmqvist E, Vasicek E, Sharan M, Barquist L, Westermann AJ, Gunn JS, Vogel J (2017) RNA target profiles direct the discovery of virulence functions for the cold-shock proteins CspC and CspE. Proc Natl Acad Sci U S A. 114(26):6824-6829

Gonzalez GM, Hardwick SW, Maslen SL, Skehel JM, Holmqvist E, Vogel J, Bateman A, Luisi BF, Broadhurst RW (2017) Structure of the Escherichia coli ProQ RNA-binding protein. RNA. 23(5):696-711

Smirnov A, Förstner KU, Holmqvist E, Otto A, Günster R, Becher D, Reinhardt R, Vogel J (2016) Grad-seq guides the discovery of ProQ as a major small RNA binding protein. Proc Natl Acad Sci U S A 113(41):11591-11596.

Holmqvist E, Wright PR, Li L, Bischler T, Barquist L, Reinhardt R, Backofen R, Vogel J (2016) Global RNA recognition patterns of post-transcriptional regulators Hfq and CsrA revealed by UV crosslinking in vivo. EMBO J. 35(9):991-1011

Holmqvist E, Vogel J (2013) A small RNA serving both the Hfq and CsrA regulons. Genes Dev. 27(10):1073-8

Holmqvist E, Reimegård J, Wagner EGH (2013) Massive functional mapping of a 5'-UTR by saturation mutagenesis, phenotypic sorting and deep sequencing. Nucleic Acids Res. 41(12):e122.

Holmqvist E, Unoson C, Reimegård J, Wagner EGH (2012) A mixed double negative feedback loop between the sRNA MicF and the global regulator Lrp. Mol Microbiol. 84(3):414-27

Holmqvist E, Reimegård J, Sterk M, Grantcharova N, Römling U, Wagner EGH (2010) Two antisense RNAs target the transcriptional regulator CsgD to inhibit curli synthesis. EMBO J. 29(11):1840-50

Baranowska I, Jäderlund KH, Nennesmo I, Holmqvist E, Heidrich N, Larsson NG, Andersson G, Wagner EG, Hedhammar A, Wibom R, Andersson L (2009) Sensory ataxic neuropathy in golden retriever dogs is caused by a deletion in the mitochondrial tRNATyr gene. PLoS Genet. 5(5):e1000499

Udekwu KI, Darfeuille F, Vogel J, Reimegård J, Holmqvist E, Wagner EGH (2005) Hfq-dependent regulation of OmpA synthesis is mediated by an antisense RNA. Genes Dev. 19(19):2355-66

Last modified: 2021-10-20