Institutionen för cell- och molekylärbiologi
  • Bergin, Claudia; Wentrup, C.; Brewig, N.; Blazejak, A. et al.

    Acquisition of a Novel Sulfur-Oxidizing Symbiont in the Gutless Marine Worm Inanidrilus exumae

    Ingår i Applied and Environmental Microbiology, 2018.

  • Ahmed, Engy; Parducci, Laura; Unneberg, Per; Ågren, Rasmus et al.

    Archaeal community changes in Lateglacial lake sediments: Evidence from ancient DNA

    Ingår i Quaternary Science Reviews, s. 19-29, 2018.

  • Garcia, Sarahi L; Stevens, Sarah L R; Crary, Benjamin; Martinez-Garcia, Manuel et al.

    Contrasting patterns of genome-level diversity across distinct co-occurring bacterial populations

    Ingår i The ISME Journal, s. 742-755, 2018.

  • Leger, Michelle M.; Eme, Laura; Stairs, Courtney W.; Roger, Andrew J. et al.

    Demystifying Eukaryote Lateral Gene Transfer

    Ingår i Bioessays, 2018.

  • Ling, Jiaxin; Smura, Teemu; Tamarit, Daniel; Huitu, Otso et al.

    Evolution and postglacial colonization of Seewis hantavirus with Sorex araneus in Finland

    Ingår i Infection, Genetics and Evolution, s. 88-97, 2018.

  • Tamarit, Daniel; Neuvonen, Minna M.; Engel, Philipp; Guy, Lionel et al.

    Origin and evolution of the Bartonella Gene Transfer Agent

    Ingår i Molecular biology and evolution, s. 451-464, 2018.

  • Franco, Irene; Johansson, Anna C. V.; Olsson, Karl; Vrtacnik, Peter et al.

    Somatic mutagenesis in satellite cells associates with human skeletal muscle aging

    Ingår i Nature Communications, 2018.

  • Urbina, Hector; Breed, Martin F.; Zhao, Weizhou; Gurrala, Kanaka Lakshmi et al.

    Specificity in Arabidopsis thaliana recruitment of root fungal communities from soil and rhizosphere

    Ingår i Fungal Biology, s. 231-240, 2018.

  • Raina, Jean-Baptiste; Eme, Laura; Pollock, F. Joseph; Spang, Anja et al.

    Symbiosis in the microbial world: from ecology to genome evolution

    Ingår i BIOLOGY OPEN, 2018.

  • Hotopp, Julie C. Dunning; Klasson, Lisa

    The Complexities and Nuances of Analyzing the Genome of Drosophila ananassae and Its Wolbachia Endosymbiont

    Ingår i G3, s. 373-374, 2018.

  • Yutin, Natalya; Bäckstrom, Disa; Ettema, Thijs J G; Krupovic, Mart et al.

    Vast diversity of prokaryotic virus genomes encoding double jelly-roll major capsid proteins uncovered by genomic and metagenomic sequence analysis

    Ingår i Virology Journal, 2018.

  • Eme, Laura; Spang, Anja; Lombard, Jonathan; Stairs, Courtney W. et al.

    Archaea and the origin of eukaryotes

    Ingår i Nature Reviews Microbiology, s. 711-723, 2017.

  • Spang, Anja; Ettema, Thijs J. G.

    Archaeal evolution: The methanogenic roots of Archaea

    Ingår i Nature Microbiology, 2017.

  • Zaremba-Niedzwiedzka, Katarzyna; Fernández Cáceres, Eva; Saw, Jimmy Hser Wah; Bäckström, Disa et al.

    Asgard archaea illuminate the origin of eukaryotic cellular complexity

    Ingår i Nature, s. 353-+, 2017.

  • Ma'ayeh, Showgy Y.; Liu, Jingyi; Peirasmaki, Dimitra; Hörnaeus, Katarina et al.

    Characterization of the Giardia intestinalis secretome during interaction with human intestinal epithelial cells: The impact on host cells

    Ingår i PLoS Neglected Tropical Diseases, 2017.

  • Gomez-Velazquez, Melisa; Badia-Careaga, Claudio; Victoria Lechuga-Vieco, Ana; Nieto-Arellano, Rocio et al.

    CTCF counter-regulates cardiomyocyte development and maturation programs in the embryonic heart

    Ingår i PLoS Genetics, 2017.

  • Ponce-de-Leon, Miguel; Tamarit, Daniel; Calle-Espinosa, Jorge; Mori, Matteo et al.

    Determinism and Contingency Shape Metabolic Complementation in an Endosymbiotic Consortium

    Ingår i Frontiers in Microbiology, 2017.

  • Clement, Yves; Sarah, Gautier; Holtz, Yan; Homa, Felix et al.

    Evolutionary forces affecting synonymous variations in plant genomes

    Ingår i PLoS Genetics, 2017.

  • B/B22, Biomedical Center (BMC), Husargatan 3, Uppsala 2017-09-29 kl 09:15

    Martijn, Joran

    Exploration of microbial diversity and evolution through cultivation independent phylogenomics

  • Gentekaki, Eleni; Curtis, Bruce A.; Stairs, Courtney W.; Klimes, Vladimir et al.

    Extreme genome diversity in the hyper-prevalent parasitic eukaryote Blastocystis

    Ingår i PLoS biology, 2017.

  • James, Rory Hennell; Caceres, Eva F.; Escasinas, Alex; Alhasan, Haya et al.

    Functional reconstruction of a eukaryotic-like E1/E2/(RING) E3 ubiquitylation cascade from an uncultured archaeon

    Ingår i Nature Communications, 2017.

  • Steige, Kim A.; Laenen, Benjamin; Reimegård, Johan; Scofield, Douglas G. et al.

    Genomic analysis reveals major determinants of cis-regulatory variation in Capsella grandiflora

    Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 1087-1092, 2017.

  • Spang, Anja; Caceres, Eva F.; Ettema, Thijs J. G.

    Genomic exploration of the diversity, ecology, and evolution of the archaeal domain of life.

    Ingår i Science, 2017.

  • Bergman, Ebba

    Haplotype Inference as a caseof Maximum Satisfiability: A strategy for identifying multi-individualinversion points in computational phasing

    2017.

  • Strawbridge, Rona J.; Silveira, Angela; den Hoed, Marcel; Gustafsson, Stefan et al.

    Identification of a novel proinsulin-associated SNP and demonstration that proinsulin is unlikely to be a causal factor in subclinical vascular remodelling using Mendelian randomisation

    Ingår i Atherosclerosis, s. 196-204, 2017.

  • Le Rhun, Anais; Lecrivain, Anne-Laure; Reimegård, Johan; Proux-Wera, Estelle et al.

    Identification of endoribonuclease specific cleavage positions reveals novel targets of RNase III in Streptococcus pyogenes

    Ingår i Nucleic Acids Research, s. 2329-2340, 2017.

  • Williams, Tom A.; Szollosi, Gergely J.; Spang, Anja; Foster, Peter G. et al.

    Integrative modeling of gene and genome evolution roots the archaeal tree of life

    Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. E4602-E4611, 2017.

  • Starnawski, Piotr; Bataillon, Thomas; Ettema, Thijs J. G.; Jochum, Lara M. et al.

    Microbial community assembly and evolution in subseafloor sediment

    Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 2940-2945, 2017.

  • Leger, Michelle M.; Kolisko, Martin; Kamikawa, Ryoma; Stairs, Courtney W. et al.

    Organelles that illuminate the origins of Trichomonas hydrogenosomes and Giardia mitosomes

    Ingår i NATURE ECOLOGY & EVOLUTION, 2017.

  • Zhu, Yafeng; Engstrom, Par G.; Tellgren-Roth, Christian; Baudo, Charles D. et al.

    Proteogenomics produces comprehensive and highly accurate protein-coding gene annotation in a complete genome assembly of Malassezia sympodialis

    Ingår i Nucleic Acids Research, s. 2629-2643, 2017.

  • Kee, Nigel; Volakakis, Nikolaos; Kirkeby, Agnete; Dahl, Lina et al.

    Single-Cell Analysis Reveals a Close Relationship between Differentiating Dopamine and Subthalamic Nucleus Neuronal Lineages

    Ingår i Cell Stem Cell, s. 29-40, 2017.

  • Giacomello, Stefania; Salmen, Fredrik; Terebieniec, Barbara K.; Vickovic, Sanja et al.

    Spatially resolved transcriptome profiling in model plant species

    Ingår i NATURE PLANTS, 2017.

  • Ameur, Adam; Dahlberg, Johan; Olason, Pall; Vezzi, Francesco et al.

    SweGen: a whole-genome data resource of genetic variability in a cross-section of the Swedish population

    Ingår i European Journal of Human Genetics, s. 1253-1260, 2017.

  • Sun, Yu; Tamarit, Daniel; Andersson, Siv

    Switches in Genomic GC Content Drive Shifts of Optimal Codons under Sustained Selection on Synonymous Sites

    Ingår i Genome Biology and Evolution, s. 2560-2579, 2017.

  • Marshall, Ian P. G.; Starnawski, Piotr; Cupit, Carina; Fernández Cáceres, Eva et al.

    The novel bacterial phylum Calditrichaeota is diverse, widespread and abundant in marine sediments and has the capacity to degrade detrital proteins

    Ingår i Environmental Microbiology Reports, s. 397-403, 2017.

  • Klasson, Lisa

    The unpredictable road to reduction

    Ingår i Nature ecology and evolution, s. 1062 1062-1063 1063, 2017.

  • Seeger, Christian; Butler, Margaret K.; Yee, Benjamin; Mahajan, Mayank et al.

    Tuwongella immobilis gen. nov., sp nov., a novel non-motile bacterium within the phylum Planctomycetes

    Ingår i International Journal of Systematic and Evolutionary Microbiology, s. 4923-4929, 2017.

  • Björkholm, Patrik; Ernst, Andreas M.; Hagström, Erik; Andersson, Siv G. E. et al.

    Why mitochondria need a genome revisited

    Ingår i FEBS Letters, s. 65-75, 2017.

  • Humble, E.; Martinez-Barrio, Alvaro; Forcada, J.; Trathan, P. N. et al.

    A draft fur seal genome provides insights into factors affecting SNP validation and how to mitigate them

    Ingår i Molecular Ecology Resources, s. 909-921, 2016.

  • Schulz, Frederik; Martijn, Joran; Wascher, Florian; Lagkouvardos, Ilias et al.

    A Rickettsiales symbiont of amoebae with ancient features

    Ingår i Environmental Microbiology, s. 2326-2342, 2016.

  • Reischauer, Sven; Stone, Oliver A.; Villasenor, Alethia; Chi, Neil et al.

    Cloche is a bHLH-PAS transcription factor that drives haemato-vascular specification

    Ingår i Nature, s. 294-+, 2016.

  • Troell, Karin; Hallstrom, Bjorn; Divne, Anna-Maria; Alsmark, Cecilia et al.

    Cryptosporidium as a testbed for single cell genome characterization of unicellular eukaryotes

    Ingår i BMC Genomics, 2016.

  • B41, Biomedical Center (BMC), Husargatan 3, Uppsala 2016-10-14 kl 09:15

    Tamarit, Daniel

    Evolution of symbiotic lineages and the origin of new traits

  • Baker, Brett J.; Saw, Jimmy H.; Lind, Anders E.; Lazar, Cassandre Sara et al.

    Genomic inference of the metabolism of cosmopolitan subsurface Archaea, Hadesarchaea

    Ingår i Nature Microbiology, 2016.

  • Heyworth, Eleanor R.; Ferrari, Julia

    Heat Stress Affects Facultative Symbiont-Mediated Protection from a Parasitoid Wasp

    Ingår i PLoS ONE, 2016.

  • Corcoran, Padraic; Anderson, Jennifer L; Jacobson, David J; Sun, Yu et al.

    Introgression maintains the genetic integrity of the mating-type determining chromosome of the fungus Neurospora tetrasperma.

    Ingår i Genome Research, s. 486-498, 2016.

  • Spang, Anja; Ettema, Thijs J. G.

    Microbial Diversity: The tree of life comes of age

    Ingår i Nature Microbiology, 2016.

  • Ettema, Thijs J. G.

    Mitochondria in the second act

    Ingår i Nature, s. 39-40, 2016.

  • Hammond, Maria; Homa, Felix; Andersson-Svahn, Helene; Ettema, Thijs J. G. et al.

    Picodroplet partitioned whole genome amplification of low biomass samples preserves genomic diversity for metagenomic analysis

    Ingår i Microbiome, 2016.

  • Le Rhun, Anais; Beer, Yan Yan; Reimegård, Johan; Chylinski, Krzysztof et al.

    RNA sequencing uncovers antisense RNAs and novel small RNAs in Streptococcus pyogenes

    Ingår i RNA Biology, s. 177-195, 2016.

  • Andersson, Siv G. E.

    Stress management strategies in single bacterial cells

    Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 3921-3923, 2016.

  • Martínez Barrio, Álvaro; Lamichhaney, Sangeet; Fan, Guangyi; Rafati, Nima et al.

    The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing

    Ingår i eLIFE, 2016.

  • Neuvonen, Minna M.; Tamarit, Daniel; Näslund, Kristina; Liebig, Juergen et al.

    The genome of Rhizobiales bacteria in predatory ants indicates a role for urease in lifestyle switches

    2016.

  • Neuvonen, Minna M.; Tamarit, Daniel; Näslund, Kristina; Liebig, Juergen et al.

    The genome of Rhizobiales bacteria in predatory ants reveals urease gene functions but no genes for nitrogen fixation

    Ingår i Scientific Reports, s. 1-11, 2016.

  • Björklund, Åsa K.; Forkel, Marianne; Picelli, Simone; Konya, Viktoria et al.

    The heterogeneity of human CD127(+) innate lymphoid cells revealed by single-cell RNA sequencing

    Ingår i Nature Immunology, s. 451-460, 2016.

  • Klinger, Christen M.; Spang, Anja; Dacks, Joel B.; Ettema, Thijs J. G. et al.

    Tracing the Archaeal Origins of Eukaryotic Membrane-Trafficking System Building Blocks

    Ingår i Molecular biology and evolution, s. 1528-1541, 2016.

  • Eiler, Alexander; Mondav, Rhiannon; Sinclair, Lucas; Fernandez-Vidal, Leyden et al.

    Tuning fresh: radiation through rewiring of central metabolism in streamlined bacteria

    Ingår i The ISME Journal, s. 1902-1914, 2016.

  • Saenko, Suzanne V.; Lamichhaney, Sangeet; Barrio, Alvaro Martinez; Rafati, Nima et al.

    Amelanism in the corn snake is associated with the insertion of an LTR-retrotransposon in the OCA2 gene

    Ingår i Scientific Reports, 2015.

  • Steige, Kim A.; Reimegård, Johan; Koenig, Daniel; Scofield, Douglas G. et al.

    Cis-Regulatory Changes Associated with a Recent Mating System Shift and Floral Adaptation in Capsella

    Ingår i Molecular biology and evolution, s. 2501-2514, 2015.

  • Ankarklev, Johan; Franzen, Oscar; Peirasmaki, Dimitra; Jerlstrom-Hultqvist, Jon et al.

    Comparative genomic analyses of freshly isolated Giardia intestinalis assemblage A isolates

    Ingår i BMC Genomics, 2015.

  • Spang, Anja; Saw, Jimmy H.; Jorgensen, Steffen L.; Zaremba-Niedzwiedzka, Katarzyna et al.

    Complex archaea that bridge the gap between prokaryotes and eukaryotes

    Ingår i Nature, s. 173-179, 2015.

  • Gottlieb, Yuval; Lalzar, Itai; Klasson, Lisa

    Distinctive Genome Reduction Rates Revealed by Genomic Analyses of Two Coxiella-Like Endosymbionts in Ticks

    Ingår i Genome Biology and Evolution, s. 1779-1796, 2015.

  • Saw, Jimmy H.; Spang, Anja; Zaremba-Niedzwiedzka, Katarzyna; Juzokaite, Lina et al.

    Exploring microbial dark matter to resolve the deep archaeal ancestry of eukaryotes

    Ingår i Philosophical Transactions of the Royal Society of London. Biological Sciences, 2015.

  • Ellegaard, Kirsten M.; Tamarit, Daniel; Javelind, Emelie; Olofsson, Tobias C. et al.

    Extensive intra-phylotype diversity in lactobacilli and bifidobacteria from the honeybee gut

    Ingår i BMC Genomics, 2015.

  • Tamarit, Daniel; Ellegaard, Kirsten M.; Wikander, Johan; Olofsson, Tobias et al.

    Functionally Structured Genomes in Lactobacillus kunkeei Colonizing the Honey Crop and Food Products of Honeybees and Stingless Bees

    Ingår i Genome Biology and Evolution, s. 1455-1473, 2015.

  • Hacke, Moritz; Bjorkholm, Patrik; Hellwig, Andrea; Himmels, Patricia et al.

    Inhibition of Ebola virus glycoprotein-mediated cytotoxicity by targeting its transmembrane domain and cholesterol

    Ingår i Nature Communications, 2015.

  • Sun, Yu; Whittle, Carrie-Ann; Corcoran, Pádraic; Johannesson, Hanna et al.

    Intron Evolution in Neurospora: the role of mutational bias and selection

    Ingår i Genome Research, s. 100-110, 2015.

  • Burri, Reto; Nater, Alexander; Kawakami, Takeshi; Mugal, Carina F. et al.

    Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers

    Ingår i Genome Research, s. 1656-1665, 2015.

  • Krzewinska, Maja; Bjornstad, Gro; Skoglund, Pontus; Ólason, Páll Isolfur et al.

    Mitochondrial DNA variation in the Viking age population of Norway

    Ingår i Philosophical Transactions of the Royal Society of London. Biological Sciences, s. 20130384-, 2015.

  • Björkholm, Patrik; Harish, Ajith; Hagström, Erik; Ernst, Andreas M. et al.

    Mitochondrial genomes are retained by selective constraints on protein targeting

    Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 10154-10161, 2015.

  • Martijn, Joran; Schulz, Frederik; Zaremba-Niedzwiedzka, Katarzyna; Viklund, Johan et al.

    Single-cell genomics of a rare environmental alphaproteobacterium provides unique insights into Rickettsiaceae evolution

    Ingår i The ISME Journal, s. 2373-2385, 2015.

  • Zepeda, Vanessa K.; Busse, Hans-Juergen; Golke, Jan; Saw, Jimmy H. W. et al.

    Terasakiispira papahanaumokuakeensis gen. nov., sp nov., a gammaproteobacterium from Pearl and Hermes Atoll, Northwestern Hawaiian Islands

    Ingår i International Journal of Systematic and Evolutionary Microbiology, s. 3609-3617, 2015.

  • Lindqvist, C Mårten; Nordlund, Jessica; Ekman, Diana; Johansson, Anna et al.

    The Mutational Landscape in Pediatric Acute Lymphoblastic Leukemia Deciphered by Whole Genome Sequencing

    Ingår i Human Mutation, s. 118-128, 2015.

  • Hammann, Philippe; Parmentier, Delphine; Cerciat, Marie; Reimegård, Johan et al.

    A method to map changes in bacterial surface composition induced by regulatory RNAs in Escherichia coli and Staphylococcus aureus

    Ingår i Biochimie, s. 175-179, 2014.

  • Blombach, Fabian; Launay, Helene; Snijders, Ambrosius P. L.; Zorraquino, Violeta et al.

    Archaeal MBF1 binds to 30S and 70S ribosomes via its helix-turn-helix domain

    Ingår i Biochemical Journal, s. 373-384, 2014.

  • Saha, Indrajit; Zubek, Julian; Klingstrom, Tomas; Forsberg, Simon et al.

    Ensemble learning prediction of protein-protein interactions using proteins functional annotations

    Ingår i MOL BIOSYST, s. 820-830, 2014.

  • Klasson, Lisa; Kumar, Nikhil; Bromley, Robin; Sieber, Karsten et al.

    Extensive duplication of the Wolbachia DNA in chromosome four of Drosophila ananassae

    Ingår i BMC Genomics, s. 1097-, 2014.

  • B42, Husargatan 3, Uppsala 2014-03-21 kl 10:15

    Ellegaard, Kirsten Maren

    Genome Evolution and Niche Differentiation of Bacterial Endosymbionts

  • Guy, Lionel; Spang, Anja; Saw, Jimmy Hser Wah; Ettema, Thijs J. G. et al.

    'Geoarchaeote NAG1' is a deeply rooting lineage of the archaeal order Thermoproteales rather than a new phylum

    Ingår i The ISME Journal, s. 1353-1357, 2014.

  • Fu, Cheng-Jie; Sheikh, Sanea; Miao, Wei; Andersson, Siv G. E. et al.

    Missing Genes, Multiple ORFs, and C-to-U Type RNA Editing in Acrasis kona (Heterolobosea, Excavata) Mitochondrial DNA

    Ingår i Genome Biology and Evolution, s. 2240-2257, 2014.

  • Schneider, Daniela I.; Klasson, Lisa; Lind, Anders E.; Miller, Wolfgang J. et al.

    More than fishing in the dark: PCR of a dispersed sequence produces simple but ultrasensitive Wolbachia detection

    Ingår i BMC Microbiology, s. 121-, 2014.

  • Eiler, Alexander; Zaremba-Niedzwiedzka, Katarzyna; Martinez Garcia, Manuel; McMahon, Katherine et al.

    Productivity and salinity structuring of the microplankton revealed by comparative freshwater metagenomics

    Ingår i Environmental Microbiology, s. 2682-2698, 2014.

  • Ettema, Thijs J. G.; Lindas, Ann-Christin; Hjort, Karin; Poplawski, Andrzej B. et al.

    Rolf Bernander (1956-2014): pioneer of the archaeal cell cycle Obituary

    Ingår i Molecular Microbiology, s. 903-909, 2014.

  • Zhao, Weizhou; Andersson, Siv G. E.

    Single cell genomics of deep ocean bacteria

    Ingår i Trends in Microbiology, s. 233-234, 2014.

  • Guy, Lionel; Saw, Jimmy Hser Wah; Ettema, Thijs J. G.

    The Archaeal Legacy of Eukaryotes: A Phylogenomic Perspective

    Ingår i Cold Spring Harbor Perspectives in Biology, s. a016022-, 2014.

  • Kutsenko, Alexey; Svensson, Thomas; Nystedt, Björn; Lundeberg, Joakim et al.

    The Chironomus tentans genome sequence and the organization of the Balbiani ring genes

    Ingår i BMC Genomics, s. 819-, 2014.

  • Xu, Feifei; Jerlström-Hultqvist, Jon; Einarsson, Elin; Astvaldsson, Asgeir et al.

    The genome of Spironucleus salmonicida highlights a fish pathogen adapted to fluctuating environments

    Ingår i PLoS Genetics, s. e1004053-, 2014.

  • Offre, Pierre; Kerou, Melina; Spang, Anja; Schleper, Christa et al.

    Variability of the transporter gene complement in ammonia-oxidizing archaea

    Ingår i Trends in Microbiology, s. 665-675, 2014.

  • Guy, Lionel; Nystedt, Björn; Toft, Christina; Zaremba-Niedzwiedzka, Katarzyna et al.

    A Gene Transfer Agent and a Dynamic Repertoire of Secretion Systems Hold the Keys to the Explosive Radiation of the Emerging Pathogen Bartonella

    Ingår i PLOS Genetics, s. e1003393-, 2013.

  • Guy, Lionel; Jernberg, Cecilia; Norling, Jenny Arven; Ivarsson, Sofie et al.

    Adaptive Mutations and Replacements of Virulence Traits in the Escherichia coli O104:H4 Outbreak Population

    Ingår i PLoS ONE, s. e63027-, 2013.

  • Spang, Anja; Martijn, Joran; Saw, Jimmy Hser Wah; Lind, Anders E. et al.

    Close Encounters of the Third Domain: The Emerging Genomic View of Archaeal Diversity and Evolution

    Ingår i Archaea, s. 202358-, 2013.

  • Sentchilo, Vladimir; Mayer, Antonia P.; Guy, Lionel; Miyazaki, Ryo et al.

    Community-wide plasmid gene mobilization and selection

    Ingår i The ISME Journal, s. 1173-1186, 2013.

  • Viklund, Johan; Martijn, Joran; Ettema, Thijs; Andersson, Siv et al.

    Comparative and Phylogenomic Evidence that the Alphaproteobacterium HIMB59 is not a Member of the Oceanic SAR11 Clade

    Ingår i PLoS ONE, s. e78858-, 2013.

  • Ellegaard, Kirsten Maren; Klasson, Lisa; Näslund, Kristina; Bourtzis, Kostas et al.

    Comparative Genomics of Wolbachia and the Bacterial Species Concept

    Ingår i PLOS Genetics, s. e1003381-, 2013.

  • Martijn, Joran; Ettema, Thijs J. G.

    From archaeon to eukaryote: the evolutionary dark ages of the eukaryotic cell

    Ingår i Biochemical Society Transactions, s. 451-457, 2013.

  • Andersson, Jan O

    Gene Transfer and the Chimeric Nature of Eukaryotic Genomes

    Ingår i Lateral Gene Transfer in Evolution, s. 181-197, 2013.

  • Jerlström-Hultqvist, Jon; Einarsson, Elin; Xu, Feifei; Hjort, Karin et al.

    Hydrogenosomes in the diplomonad Spironucleus salmonicida

    Ingår i Nature Communications, s. 2493-, 2013.

  • Holmqvist, Erik; Reimegard, Johan; Wagner, Gerhart E. H.

    Massive functional mapping of a 5'-UTR by saturation mutagenesis, phenotypic sorting and deep sequencing

    Ingår i Nucleic Acids Research, s. e122-, 2013.

  • B41, Husargatan 3, Uppsala 2013-10-18 kl 13:15

    Zaremba-Niedźwiedzka, Katarzyna

    Microbial Metagenomics: A Tale of the Dead and the Living

  • Zaremba-Niedzwiedzka, Katarzyna; Andersson, Siv G. E.

    No Ancient DNA Damage in Actinobacteria from the Neanderthal Bone

    Ingår i PLoS ONE, s. e62799-, 2013.

  • BMC, B41, Husargatan 8, Uppsala 2013-11-14 kl 13:15

    Viklund, Johan

    Phylogenomics of Oceanic Bacteria

  • Zaremba-Niedzwiedzka, Katarzyna; Viklund, Johan; Zhao, Weizhou; Ast, Jennifer et al.

    Single cell genomics reveals low recombination frequencies in freshwater bacteria of the SAR11 clade

    Ingår i Genome Biology, 2013.

  • Ellegaard, Kirsten Maren; Klasson, Lisa; Andersson, Siv G. E.

    Testing the Reproducibility of Multiple Displacement Amplification on Genomes of Clonal Endosymbiont Populations

    Ingår i PLoS ONE, s. e82319-, 2013.

  • Siozios, Stefanos; Ioannidis, Panagiotis; Klasson, Lisa; Andersson, Siv G. E. et al.

    The Diversity and Evolution of Wolbachia Ankyrin Repeat Domain Genes

    Ingår i PLoS ONE, s. e55390-, 2013.

  • Nystedt, Bjorn; Street, Nathaniel R.; Wetterbom, Anna; Zuccolo, Andrea et al.

    The Norway spruce genome sequence and conifer genome evolution

    Ingår i Nature, s. 579-584, 2013.

  • Guy, Lionel; Nystedt, Björn; Sun, Yu; Näslund, Kristina et al.

    A genome-wide study of recombination rate variation in Bartonella henselae

    Ingår i BMC Evolutionary Biology, s. 65-, 2012.

  • Andersson, Siv G. E.; Goodman, A. L.

    Bacterial genomes: Next generation sequencing technologies for studies of bacterial ecosystems

    Ingår i Current Opinion in Microbiology, s. 603-604, 2012.

  • Ankarklev, Johan; Hestvik, Elin; Lebbad, Marianne; Lindh, Johan et al.

    Common Coinfections of Giardia intestinalis and Helicobacter pylori in Non-Symptomatic Ugandan Children

    Ingår i PLOS Neglected Tropical Diseases, s. e1780-, 2012.

  • Andersson, Jan O

    Double peaks reveal rare diplomonad sex

    Ingår i Trends in Parasitology, s. 46-52, 2012.

  • Eklund, Sandra; Lindås, Ann-Christin; Hamnevik, Emil; Widersten, Mikael et al.

    Exploring the active site of tripeptidyl-peptidase II through studies of pH dependence of reaction kinetics

    Ingår i Biochimica et Biophysica Acta - Proteins and Proteomics, s. 561-570, 2012.

  • Pelve, Erik A.; Lindås, Ann-Christin; Knöppel, Anna; Mira, Alex et al.

    Four chromosome replication origins in the archaeon Pyrobaculum calidifontis

    Ingår i Molecular Microbiology, s. 986-995, 2012.

  • Xu, Feifei; Jerlström-Hultqvist, Jon; Andersson, Jan O

    Genome-Wide Analyses of Recombination Suggest That Giardia intestinalis Assemblages Represent Different Species

    Ingår i Molecular biology and evolution, s. 2895-2898, 2012.

  • Guy, Lionel; Jernberg, Cecilia; Ivarsson, Sofie; Hedenstrom, Ingela et al.

    Genomic diversity of the 2011 European outbreaks of Escherichia coli O104:H4

    Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. E3627-E3628, 2012.

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    Large-Scale Introgression Shapes the Evolution of the Mating-Type Chromosomes of the Filamentous Ascomycete Neurospora tetrasperma

    Ingår i PLOS Genetics, s. e1002820-, 2012.

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    Phylogenomic approaches underestimate eukaryotic gene transfer

    Ingår i Mobile Genetic Elements, s. 59-62, 2012.

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    Pronounced seasonal dynamics of freshwater chitinase genes and chitin processing

    Ingår i Environmental Microbiology, s. 2467-2479, 2012.

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    Proteome-Wide Analysis of Functional Divergence in Bacteria: Exploring a Host of Ecological Adaptations

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    Regulation of archaella expression by the FHA and von Willebrand domain-containing proteins ArnA and ArnB in Sulfolobus acidocaldarius

    Ingår i Molecular Microbiology, s. 24-36, 2012.

  • C4:301, Biomedicinskt Centrum, Husargatan 3; BMC, Uppsala 2012-02-03 kl 13:15

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    Unique Solutions to Universal Problems: Studies of the Archaeal Cell

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    A combined evidence phylogenetic analysis of Anguimorpha (Reptilia: Squamata)

    Ingår i Cladistics, s. 230-277, 2011.

  • Brindefalk, Björn; Ettema, Thijs J. G.; Viklund, Johan; Thollesson, Mikael et al.

    A Phylometagenomic Exploration of Oceanic Alphaproteobacteria Reveals Mitochondrial Relatives Unrelated to the SAR11 Clade

    Ingår i PLoS ONE, s. e24457-, 2011.

  • Ettema, Thijs J. G.; Lindås, Ann-Christin; Bernander, Rolf

    An actin-based cytoskeleton in archaea

    Ingår i Molecular Microbiology, s. 1052-1061, 2011.

  • Bernander, Rolf; Lind, Anders E.; Ettema, Thijs J.G.

    An archaeal origin for the actin cytoskeleton: implications for eukaryogenesis

    Ingår i Communicative & Integrative Biology, s. 664-667, 2011.

  • Decaestecker, Ellen; Labbe, Pierrick; Ellegaard, Kirsten; Allen, Judith E. et al.

    Candidate innate immune system gene expression in the ecological model Daphnia

    Ingår i Developmental and Comparative Immunology, s. 1066-1075, 2011.

  • Pelve, Erik A.; Lindås, Ann-Christin; Martens-Habbena, Willm; de la Torre, José R. et al.

    Cdv-based cell division and cell cycle organization in the thaumarchaeon Nitrosopumilus maritimus

    Ingår i Molecular Microbiology, s. 555-566, 2011.

  • Andersson, Jan O

    Evolution of Patchily Distributed Proteins Shared between Eukaryotes and Prokaryotes: Dictyostelium as a Case Study

    Ingår i Journal of Molecular Biology and Biotechnology, s. 83-95, 2011.

  • Viklund, Johan; Ettema, Thijs; Andersson, Siv G. E.

    Independent Genome Reduction and Phylogenetic Reclassification of the Oceanic SAR11 Clade

    Ingår i Molecular biology and evolution, s. 599-615, 2011.

  • Söderberg, R. Jonas; Berg, Otto G.

    Kick-Starting the Ratchet: The Fate of Mutators in an Asexual Population

    Ingår i Genetics, s. 1129-1137, 2011.

  • Lebbad, Marianne; Petersson, Ingvor; Karlsson, Lillemor; Botero-Kleiven, Silvia et al.

    Multilocus Genotyping of Human Giardia Isolates Suggests Limited Zoonotic Transmission and Association between Assemblage B and Flatulence in Children

    Ingår i PLoS Neglected Tropical Diseases, s. e1262 e1262-, 2011.

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    Phylogeny, genomics, and symbiosis of Photobacterium

    Ingår i FEMS Microbiology Reviews, s. 324-342, 2011.

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    Selection of Resistant Bacteria at Very Low Antibiotic Concentrations

    Ingår i PLoS pathogens, s. e1002158-, 2011.

  • Ekmansalen, Evolutionsbiologiskt centrum, EBC Norbyvägen 14, Uppsala 2011-10-07 kl 13:00

    Söderberg, Jonas

    Surviving the ratchet: Modelling deleterious mutations in asexual populations

  • Minczuk, Michal; He, Jiuya; Duch, Anna; Ettema, Thijs et al.

    TEFM (c17orf42) is necessary for transcription of human mtDNA

    Ingår i Nucleic Acids Research, s. 4284-4299, 2011.

  • Guy, Lionel; Ettema, Thijs J. G.

    The archaeal ‘TACK’ superphylum and the origin of eukaryotes

    Ingår i Trends in Microbiology, s. 580-587, 2011.

  • Llorens, Carlos; Futami, Ricardo; Covelli, Laura; Domínguez-Escribá, Laura et al.

    The Gypsy Database (GyDB) of mobile genetic elements: release 2.0.

    Ingår i Nucleic Acids Research, 2011.

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    The New Foundations of Evolution: On the Tree of Life

    Ingår i Systematic Biology, s. 114-115, 2011.

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    A novel Chlamydiaceae-like bacterium found in faecal specimens from sea birds from the Bering Sea

    Ingår i Environmental Microbiology Reports, s. 605-610, 2010.

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    Amplified fragment length polymorphism (AFLP) analysis of closely related wild and captive tsetse fly (Glossina morsitans morsitans) populations

    Ingår i Parasites & Vectors, s. 47-, 2010.

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    Compensatory gene amplification restores fitness after inter-species gene replacements

    Ingår i Molecular Microbiology, s. 1078-1089, 2010.

  • Toft, Christina; Andersson, Siv G. E.

    Evolutionary microbial genomics: insights into bacterial host adaptation

    Ingår i Nature reviews genetics, s. 465-475, 2010.

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    From mouse to moose: multilocus genotyping of Giardia isolates from various animal species.

    Ingår i Veterinary parasitology, s. 231-239, 2010.

  • Bernander, Rolf; Ettema, Thijs J.G.

    FtsZ-less cell division in archaea and bacteria

    Ingår i Current Opinion in Microbiology, s. 747-752, 2010.

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    Genome Sequence of the Pea Aphid Acyrthosiphon pisum

    Ingår i PLoS biology, s. e1000313-, 2010.

  • Guy, Lionel; Roat Kultima, Jens; Andersson, Siv G.E.

    genoPlotR: comparative gene and genome visualization in R

    Ingår i Bioinformatics, s. 2334-2335, 2010.

  • Gerardo, Nicole M; Altincicek, Boran; Anselme, Caroline; Atamian, Hagop et al.

    Immunity and other defenses in pea aphids, Acyrthosiphon pisum.

    Ingår i Genome Biology, 2010.

  • Roxström-Lindquist, Katarina; Jerlström-Hultqvist, Jon; Jörgensen, Anders; Troell, Karin et al.

    Large genomic differences between the morphologically indistinguishable diplomonads Spironucleus barkhanus and Spironucleus salmonicida.

    Ingår i BMC Genomics, s. 258-, 2010.

  • Lind, Peter A.; Berg, Otto G.; Andersson, Dan I

    Mutational robustness of ribosomal protein genes

    Ingår i Science, s. 825-827, 2010.

  • Berglund, Eva C.; Ellegaard, Kirsten; Granberg, Fredrik; Xie, Zhoupeng et al.

    Rapid diversification by recombination in Bartonella grahamii from wild rodents in Asia contrasts with low levels of genomic divergence in Northern Europe and America

    Ingår i Molecular Ecology, s. 2241-2255, 2010.

  • Fange, David; Berg, Otto G; Sjöberg, Paul; Elf, Johan et al.

    Stochastic reaction-diffusion kinetics in the microscopic limit

    Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 19820-19825, 2010.

  • Quebatte, Maxime; Dehio, Michaela; Tropel, David; Basler, Andrea et al.

    The BatR/BatS Two-Component Regulatory System Controls the Adaptive Response of Bartonella henselae during Human Endothelial Cell Infection

    Ingår i Journal of Bacteriology, s. 3352-3367, 2010.

  • Andersson, Jan O.; Jerlström-Hultqvist, Jon; Svärd, Staffan G.

    The genome of Giardia and other diplomonads

    Ingår i Anaerobic Parasitic Protozoa: Genomics and Molecular Biology, s. 23-44, 2010.

  • Williams, Tom A; Codoner, Francisco M; Toft, Christina; Fares, Mario A et al.

    Two chaperonin systems in bacterial genomes with distinct ecological roles

    Ingår i Trends in Genetics, s. 47-51, 2010.

  • Ettema, Thijs; Rolf, Bernander

    Cell division and the ESCRT complex: A surprise from the archaea

    Ingår i Communicative & Integrative Biology, s. 86-88, 2009.

  • Andersson, Jan O.

    Gene Transfer and Diversification of Microbial Eukaryotes

    Ingår i Annual Review of Microbiology, s. 177-193, 2009.

  • Andersson, Jan O.

    Horizontal gene transfer between microbial eukaryotes.

    Ingår i Methods in Molecular Biology, s. 473-487, 2009.

  • Panchaud, Alexandre; Guy, Lionel; Collyn, François; Haenni, Marisa et al.

    M-protein and other intrinsic virulence factors of Streptococcus pyogenes are encoded on an ancient pathogenicity island

    Ingår i BMC Genomics, 2009.

  • Ettema, Thijs; Andersson, Siv

    Comment on "A 3-hydroxypropionate/4-hydroxybutyrate autotrophic carbon dioxide assimilation pathway in Archaea"

    Ingår i Science, s. 342-, 2008.

  • Dutilh, Bas E.; Snel, Berend; Ettema, Thijs J.G.; Huynen, Martijn A. et al.

    Signature genes as a phylogenomic tool

    Ingår i Molecular biology and evolution, s. 1659-1667, 2008.

  • Grogan, Dennis W; Ozarzak, Melissa A; Bernander, Rolf

    Variation in gene content among geographically diverse Sulfolobus isolates

    Ingår i Environmental Microbiology, s. 137-146, 2008.

  • Andersson, Jan O; Andersson, Siv GE

    A century of typhus, lice and Rickettsia

    Ingår i Research in Microbiology, s. 143-150, 2000.

  • Lundgren, Magnus; Malandrin, Laurence; Eriksson, Stefan; Huber, Harald et al.

    Cell Cycle Characteristics of Crenarchaea: Unity among Diversity

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    Comparative Genomics of Lactobacillus kunkeii indicates Selection for Rapid Growth in the Beebread

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    Deep mitochondrial origin outside the sampled alphaproteobacteria

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    Functionally structured genome architectures in Lactobacillus – insights into their variability and evolution

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    Inter-species variation in the pH dependence of tripeptidyl-peptidase II

  • Sun, Yu; Corcoran, Pádraic; Åslin, Matilda; Lao, Zhiqin et al.

    Lineage-specific chromosomal inversions in Neurospora tetrasperma

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    Metagenomic analysis of a distal gut sample from the Tyrolean Iceman

  • Söderberg, Jonas; Berg, Otto

    Mutation load in sexual and asexual populations: Effects of distributed selection coefficients on stationary fitness and rate of fitness loss

  • Harish, Ajith; Viklund, Johan; Andersson, Siv

    New protein functions evolve by expansion of ancestral fold architectures and evolution of disordered proteins de novo

  • Viklund, Johan; Andersson, Siv

    On the importance of taxonomically representative groups for the inference of adaptive traits in surface oceanic bacteria

  • Wu, Di; Yan, Junhong; Sun, Yu; Ronquist, Göran et al.

    Profiling individual protein complexes by proximity-dependent barcoding

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    Spironucleus mitochondrial remnants suggest that hydrogenosomes are ancient organelles

    Ingår i Proceedings of the National Academy of Sciences of the United States of America

  • Zaremba-Niedźwiedzka,, Katarzyna; Sylvin, Isak; Andersson, Siv

    Testing fragment recruitment methods by simulating environmental communities of different complexities