Institutionen för cell- och molekylärbiologi
  • Artikel i tidskrift

    Munke, Anna; van der Schot, Gijs; Maia, Filipe; Ekeberg, Tomas et al.

    Coherent diffraction of single Rice Dwarf Virus particles using soft X-rays at the Linac Coherent Light Source

    Ingår i Nature Scientific Data, 2018.

  • Artikel i tidskrift

    Pabis, Anna; Risso, Valeria A.; Sanchez-Ruiz, Jose M.; Kamerlin, Shina C. Lynn et al.

    Cooperativity and flexibility in enzyme evolution

    Ingår i Current opinion in structural biology, s. 83-92, 2018.

  • Artikel i tidskrift

    Gorkhover, Tais; Ulmer, Anatoli; Ferguson, Ken; Bucher, Max et al.

    Femtosecond X-ray Fourier holography imaging of free-flying nanoparticles

    Ingår i Nature Photonics, s. 150-153, 2018.

  • Artikel i tidskrift

    Jönsson, Olof; Östlin, Christofer; Scott, Howard A.; Chapman, Henry et al.

    FreeDam – A webtool for free-electron laser-induced damage in femtosecond X-ray crystallography

    Ingår i High Energy Density Physics, s. 93 93-98 98, 2018.

  • Doktorsavhandling, sammanläggning
    B/A1:111a, BMC, Husargatan 3, Uppsala 2018-03-12 kl 09:00

    van der Schot, Gijs

    Imaging Living Cells with an X-ray Laser

  • Artikel i tidskrift

    Zawada, Katarzyna E.; Okamoto, Kenta; Kasson, Peter M.

    Influenza Hemifusion Phenotype Depends on Membrane Context: Differences in Cell-Cell and Virus-Cell Fusion

    Ingår i Journal of Molecular Biology, s. 594-601, 2018.

  • Artikel i tidskrift

    Östlin, Christofer; Timneanu, Nicusor; Jonsson, H. Olof; Ekeberg, Tomas et al.

    Reproducibility of single protein explosions induced by X-ray lasers

    Ingår i Physical Chemistry, Chemical Physics - PCCP, 2018.

  • Artikel i tidskrift

    Naumova, Maria; Khakhulin, Dmitry; Rebarz, Mateusz; Rohrmueller, Martin et al.

    Structural dynamics upon photoexcitation-induced charge transfer in a dicopper(I)-disulfide complex

    Ingår i Physical Chemistry, Chemical Physics - PCCP, s. 6274-6286, 2018.

  • Artikel i tidskrift

    Valegård, Karin; Hasse, Dirk; Andersson, Inger; Gunn, Laura H. et al.

    Structure of Rubisco from Arabidopsis thaliana in complex with 2-carboxyarabinitol-1,5-bis­phosphate

    Ingår i ACTA CRYSTALLOGRAPHICA SECTION D: STRUCTURAL BIOLOGY, s. 1-9, 2018.

  • Artikel i tidskrift

    Yu, Young-Sang; Farmand, Maryam; Kim, Chunjoong; Liu, Yijin et al.

    Three-dimensional localization of nanoscale battery reactions using soft X-ray tomography

    Ingår i Nature Communications, 2018.

  • Artikel i tidskrift

    Dicke, B.; Hoffmann, A.; Stanek, J.; Rampp, M. S. et al.

    Transferring the entatic-state principle to copper photochemistry

    Ingår i Nature Chemistry, s. 355-362, 2018.

  • Artikel i tidskrift

    Beyerlein, Kenneth; Jönsson, Olof; Alonso-Mori, Roberto; Aquila, Andrew et al.

    Ultrafast non-thermal heating of water initiated by an X-ray laser

    Ingår i Proceedings of the National Academy of Sciences of the United States of America, 2018.

  • Doktorsavhandling, sammanläggning
    Room B7:101a, Biomedicinska Centrum (BMC), Husargatan 3, Uppsala 2017-12-15 kl 13:00

    Daurer, Benedikt J.

    Algorithms for Coherent Diffractive Imaging with X-ray Lasers

  • Artikel i tidskrift

    Pietrini, Alberto; Nettelblad, Carl

    Artifact reduction in the CSPAD detectors used for LCLS experiments

    Ingår i Journal of Synchrotron Radiation, s. 1092-1097, 2017.

  • Artikel i tidskrift

    Gunn, Laura; Valegard, K; Andersson, Inger

    A unique structural domain in Methanococcoides burtonii ribulose-1,5-bisphosphatecarboxylase/oxygenase (Rubisco) acts as a small subunit mimic

    Ingår i Journal of Biological Chemistry, s. 6838-6850, 2017.

  • Artikel i tidskrift

    Reddy, Hemanth K. N.; Yoon, Chun Hong; Aquila, Andrew; Awel, Salah et al.

    Coherent soft X-ray diffraction imaging of Coliphage PR772 at the Linac coherent light source

    Ingår i Scientific Data, 2017.

  • Artikel i tidskrift

    Zhang, Jin; Zhang, Haiyang; Wu, Tao; Wang, Qi et al.

    Comparison of Implicit and Explicit Solvent Models for the Calculation of Solvation Free Energy in Organic Solvents

    Ingår i Journal of Chemical Theory and Computation, s. 1034-1043, 2017.

  • Artikel i tidskrift

    Kurta, Ruslan P.; Donatelli, Jeffrey J.; Yoon, Chun Hong; Berntsen, Peter et al.

    Correlations in scattered X-ray laser pulses reveal nanoscale structural features of viruses

    Ingår i Physical Review Letters, s. 158102:1-7, 2017.

  • Artikel i tidskrift

    Kurimoto, Eiji; Satoh, Tadashi; Ito, Yuri; Ishihara, Eri et al.

    Crystal structure of human proteasome assembly chaperone PAC4 involved in proteasome formation

    Ingår i Protein Science, s. 1080-1085, 2017.

  • Artikel i tidskrift

    Larsson, Anna M.; Hasse, Dirk; Valegård, Karin; Andersson, Inger et al.

    Crystal structures of β-carboxysome shell protein CcmP: ligand binding correlates with the closed or open central pore

    Ingår i Journal of Experimental Botany, s. 3857-3867, 2017.

  • Artikel i tidskrift

    Daurer, Benedikt J.; Okamoto, Kenta; Bielecki, Johan; Maia, Filipe R. N. C. et al.

    Experimental strategies for imaging bioparticles with femtosecond hard X-ray pulses

    Ingår i IUCrJ, s. 251-262, 2017.

  • Artikel i tidskrift

    Liao, Qinghua; Pabis, Anna; Strodel, Birgit; Kamerlin, Shina Caroline Lynn et al.

    Extending the Nonbonded Cationic Dummy Model to Account for Ion-Induced Dipole Interactions

    Ingår i Journal of Physical Chemistry Letters, s. 5408-5414, 2017.

  • Artikel i tidskrift

    Popp, David; Loh, N. Duane; Zorgati, Habiba; Ghoshdastider, Umesh et al.

    Flow-aligned, single-shot fiber diffraction using a femtosecond X-ray free-electron laser

    Ingår i CYTOSKELETON, s. 472 472-481 481, 2017.

  • Artikel i tidskrift

    Jönsson, H. Olof; Caleman, Carl; Andreasson, Jakob; Timneanu, Nicusor et al.

    Hit detection in serial femtosecond crystallography using X-ray spectroscopy of plasma emission

    Ingår i IUCrJ, s. 778-784, 2017.

  • Artikel i tidskrift

    Ryan, Rebecca A.; Williams, Sophie; Martin, Andrew V.; Dilanian, Ruben A. et al.

    Measurements of Long-range Electronic Correlations During Femtosecond Diffraction Experiments Performed on Nanocrystals of Buckminsterfullerene

    Ingår i Journal of Visualized Experiments, 2017.

  • Artikel i tidskrift

    Daurer, Benedikt J.; Krishnan, Hari; Perciano, Talita; Rocha Neves Couto Maia, Filipe et al.

    Nanosurveyor: a framework for real-time data processing

    Ingår i Advanced Structural and Chemical Imaging, 2017.

  • Artikel i tidskrift

    Farmand, Maryam; Celestre, Richard; Denes, Peter; Kilcoyne, A. L. David et al.

    Near-edge X-ray refraction fine structure microscopy

    Ingår i Applied Physics Letters, 2017.

  • Artikel i tidskrift

    Munke, Anna; Persson, Jonas; Weiffert, Tanja; De Genst, Erwin et al.

    Phage display and kinetic selection of antibodies that specifically inhibit amyloid self-replication

    Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 6444-6449, 2017.

  • Konferensbidrag

    Sala, S.; Daurer, B. J.; Hantke, M. F.; Ekeberg, Tomas et al.

    Ptychographic imaging for the characterization of X-ray free-electron laser beams

    Ingår i X-RAY MICROSCOPY CONFERENCE 2016 (XRM 2016), 2017.

  • Artikel i tidskrift

    Okamoto, Kenta; Miyazaki, Naoyuki; Song, Chihong; Maia, Filipe et al.

    Structural variability and complexity of the giant Pithovirus sibericum particle revealed by high-voltage electron cryo-tomography and energy-filtered electron cryo-microscopy

    Ingår i Scientific Reports, 2017.

  • Artikel i tidskrift

    Hajdu, Janos

    Structures from poorly diffracting crystals: a new start for macromolecular crystallography?

    Ingår i Journal of applied crystallography, s. 982-984, 2017.

  • Doktorsavhandling, sammanläggning
    Polhemssalen, Lägerhyddsvägen 1, Uppsala 2017-12-15 kl 09:15

    Jönsson, Olof

    Ultrafast Structural and Electron Dynamics in Soft Matter Exposed to Intense X-ray Pulses

  • Artikel i tidskrift

    Espinoza, Shirly; Neuber, Gerd; Brooks, Christopher D.; Besner, Bastian et al.

    User oriented end-station on VUV pump-probe magneto-optical ellipsometry at ELI beamlines

    Ingår i Applied Surface Science, s. 378-382, 2017.

  • Artikel i tidskrift

    Hantke, Max F.; Hasse, Dirk; Ekeberg, Tomas; John, Katja et al.

    A data set from flash X-ray imaging of carboxysomes

    Ingår i Scientific Data, 2016.

  • Kapitel i bok, del av antologi

    Krikunova, Maria; Timneanu, Nicusor; Andreasson, Jakob

    Atomic and molecular systems under intense X-ray radiation

    Ingår i Ultrafast Dynamics Driven by Intense Light Pulses, s. 319-339, 2016.

  • Artikel i tidskrift

    Maia, Filipe R. N. C.; White, Thomas A.; Loh, N. Duane; Hajdu, Janos et al.

    CCP-FEL: a collection of computer programs for free-electron laser research

    Ingår i Journal of applied crystallography, s. 1117-1120, 2016.

  • Artikel i tidskrift

    Munke, Anna; Andreasson, Jakob; Aquila, Andrew; Awel, Salah et al.

    Coherent diffraction of single Rice Dwarf virus particles using hard X-rays at the Linac Coherent Light Source

    Ingår i Scientific Data, s. 160064:1-12, 2016.

  • Doktorsavhandling, sammanläggning
    E10:1307-E10:1309, Biomedical Centre, Husargatan 3, Uppsala 2016-12-19 kl 09:30

    Hantke, Max Felix

    Coherent Diffractive Imaging with X-ray Lasers

  • Artikel, forskningsöversikt

    Hantke, Max F.; Ekeberg, Tomas; Maia, Filipe R. N. C.

    Condor: a simulation tool for flash X-ray imaging

    Ingår i Journal of applied crystallography, s. 1356-1362, 2016.

  • Artikel i tidskrift

    Meyer, Peter A.; Socias, Stephanie; Key, Jason; Ransey, Elizabeth et al.

    Data publication with the structural biology data grid supports live analysis

    Ingår i Nature Communications, 2016.

  • Artikel i tidskrift

    Szöke, Abraham; Hajdu, Janos

    Energy utilization in fluctuating biological energy converters

    Ingår i Structural Dynamics, 2016.

  • Artikel i tidskrift

    Daurer, Benedikt J.; Hantke, Max F.; Nettelblad, Carl; Maia, Filipe R. N. C. et al.

    Hummingbird: monitoring and analyzing flash X-ray imaging experiments in real time

    Ingår i Journal of applied crystallography, s. 1042-1047, 2016.

  • Artikel i tidskrift

    van der Schot, Gijs; Svenda, Martin; Maia, Filipe R.N.C.; Hantke, Max F. et al.

    Open data set of live cyanobacterial cells imaged using an X-ray laser

    Ingår i Scientific Data, 2016.

  • Konferensbidrag

    Parkinson, Dilworth Y.; Beattie, Keith; Chen, Xian; Correa, Joaquin et al.

    Real-Time Data-Intensive Computing

    Ingår i Proceedings Of The 12Th International Conference On Synchrotron Radiation Instrumentation (SRI2015), 2016.

  • Artikel i tidskrift

    Marchesini, Stefano; Krishnan, Hari; Daurer, Benedikt J.; Shapiro, David A. et al.

    SHARP: a distributed GPU-based ptychographic solver

    Ingår i Journal of applied crystallography, s. 1245-1252, 2016.

  • Artikel i tidskrift

    Ekeberg, Tomas; Svenda, Martin; Seibert, M. Marvin; Abergel, Chantal et al.

    Single-shot diffraction data from the Mimivirus particle using an X-ray free-electron laser

    Ingår i Scientific Data, 2016.

  • Artikel i tidskrift

    Gudmundsson, Mikael; Hansson, Henrik; Karkehabadi, Saeid; Larsson, Anna et al.

    Structural and functional studies of the glycoside hydrolase family 3 beta-glucosidase Cel3A from the moderately thermophilic fungus Rasamsonia emersonii

    Ingår i ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, s. 860-870, 2016.

  • Artikel i tidskrift

    Bielecki, Johan; Parker, Stewart F.; Mazzei, Laura; Börjesson, Lars et al.

    Structure and dehydration mechanism of the proton conducting oxide Ba2In2O5(H2O)(x)

    Ingår i Journal of Materials Chemistry A, s. 1224-1232, 2016.

  • Artikel i tidskrift

    Sharwood, Robert; Ghannoum, Oula; Kapralov, Maxim; Gunn, Laura et al.

    Temperature responses of Rubisco from Paniceae grasses provide opportunities for improving C3 photosynthesis

    Ingår i Nature Plants, 2016.

  • Artikel i tidskrift

    Karlsson, Johan; Martinelli, Anna; Fathali, Hoda M.; Bielecki, Johan et al.

    The effect of alendronate on biomineralization at the bone/implant interface

    Ingår i Journal of Biomedical Materials Research. Part A, s. 620-629, 2016.

  • Artikel i tidskrift

    Okamoto, Kenta; Miyazaki, Naoyuki; Larsson, Daniel S. D.; Kobayashi, Daisuke et al.

    The infectious particle of insect-borne totivirus-like Omono River virus has raised ridges and lacks fibre complexes

    Ingår i Scientific Reports, 2016.

  • Artikel i tidskrift

    Maia, Filipe R. N. C.; Hajdu, Janos

    The trickle before the torrent-diffraction data from X-ray lasers

    Ingår i Scientific Data, 2016.

  • Studentuppsats (Examensarbete)

    Vu, Emy

    Towards determining a high-resolution structure of the coat proteins on PR772

    2016.

  • Artikel i tidskrift

    Braun, Tatjana; Orlova, Albina; Valegård, Karin; Lindas, Ann-Christin et al.

    Archaeal actin from a hyperthermophile forms a single-stranded filament

    Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 9340-9345, 2015.

  • Artikel i tidskrift

    Allen, Andrew J.; Hajdu, Janos; Kaysser-Pyzalla, Anke R.

    Beyond the International Year of Crystallography

    Ingår i Journal of applied crystallography, s. 1-2, 2015.

  • Artikel i tidskrift

    van der Schot, Gijs; Svenda, Martin; Maia, Filipe R. N. C.; Hantke, Max et al.

    Imaging single cells in a beam of live cyanobacteria with an X-ray laser

    Ingår i Nature Communications, 2015.

  • Artikel i tidskrift

    Ekeberg, Tomas; Engblom, Stefan; Liu, Jing

    Machine learning for ultrafast X-ray diffraction patterns on large-scale GPU clusters

    Ingår i The international journal of high performance computing applications, s. 233-243, 2015.

  • Artikel i tidskrift

    Jönsson, H. Olof; Timneanu, Nicusor; Östlin, Christofer; Scott, Howard A. et al.

    Simulations of radiation damage as a function of the temporal pulse profile in femtosecond X-ray protein crystallography

    Ingår i Journal of Synchrotron Radiation, s. 256-266, 2015.

  • Artikel i tidskrift

    Martin, Andrew V.; Corso, Justine K.; Caleman, Carl; Timneanu, Nicusor et al.

    Single-molecule imaging with longer X-ray laser pulses

    Ingår i IUCrJ, s. 661-674, 2015.

  • Artikel i tidskrift

    Hasse, Dirk; Larsson, Anna M; Andersson, Inger

    Structure of Arabidopsis thaliana Rubisco activase

    Ingår i Acta Crystallographica Section D, s. 800-808, 2015.

  • Artikel i tidskrift

    Aquila, A.; Barty, A.; Bostedt, C.; Boutet, S. et al.

    The linac coherent light source single particle imaging road map

    Ingår i Structural Dynamics, 2015.

  • Artikel i tidskrift

    Ekeberg, Tomas; Svenda, Martin; Abergel, Chantal; Maia, Filipe R. N. C. et al.

    Three-dimensional reconstruction of the giant mimivirus particle with an X-ray free-electron laser

    Ingår i Physical Review Letters, s. 098102:1-6, 2015.

  • Artikel i tidskrift

    Galli, Lorenzo; Son, Sang-Kil; Barends, Thomas R. M.; White, Thomas A. et al.

    Towards phasing using high X-ray intensity

    Ingår i IUCrJ, s. 627-634, 2015.

  • Artikel i tidskrift

    Caleman, Carl; Timneanu, Nicusor; Martin, Andrew V.; Jönsson, H. Olof et al.

    Ultrafast self-gating Bragg diffraction of exploding nanocrystals in an X-ray laser

    Ingår i Optics Express, s. 1213-1231, 2015.

  • Artikel i tidskrift

    Andreasson, Jakob; Martin, Andrew V.; Liang, Meng; Timneanu, Nicusor et al.

    Automated identification and classification of single particle serial femtosecond X-ray diffraction data

    Ingår i Optics Express, s. 2497-2510, 2014.

  • Artikel i tidskrift

    Barty, Anton; Kirian, Richard A.; Maia, Filipe R. N. C.; Hantke, Max et al.

    Cheetah: software for high-throughput reduction and analysis of serial femtosecond X-ray diffraction data

    Ingår i Journal of applied crystallography, s. 1118-1131, 2014.

  • Artikel i tidskrift

    Shapiro, David A.; Yu, Young-Sang; Tyliszczak, Tolek; Cabana, Jordi et al.

    Chemical composition mapping with nanometre resolution by soft X-ray microscopy

    Ingår i Nature Photonics, s. 765-769, 2014.

  • Artikel i tidskrift

    van Lun, Michiel; Hub, Jochen S.; van der Spoel, David; Andersson, Inger et al.

    CO2 and O-2 Distribution in Rubisco Suggests the Small Subunit Functions as a CO2 Reservoir

    Ingår i Journal of the American Chemical Society, s. 3165-3171, 2014.

  • Artikel i tidskrift

    Chapman, Henry N.; Caleman, Carl; Timneanu, Nicusor

    Diffraction before destruction

    Ingår i Philosophical Transactions of the Royal Society of London. Biological Sciences, s. 20130313-, 2014.

  • Artikel i tidskrift

    Passoni, Matteo; Zani, Alessandro; Sgattoni, Andrea; Dellasega, David et al.

    Energetic ions at moderate laser intensities using foam-based multi-layered targets

    Ingår i Plasma Physics and Controlled Fusion, s. 045001-, 2014.

  • Artikel i tidskrift

    Rath, Asawari D.; Timneanu, Nicusor; Maia, Filipe R. N. C.; Bielecki, Johan et al.

    Explosion dynamics of sucrose nanospheres monitored by time of flight spectrometry and coherent diffractive imaging at the split-and-delay beam line of the FLASH soft X-ray laser

    Ingår i Optics Express, s. 28914-28925, 2014.

  • Artikel i tidskrift

    Bielecki, Johan; Rata, A. D.; Borjesson, L.

    Femtosecond optical reflectivity measurements of lattice-mediated spin repulsions in photoexcited LaCoO3 thin films

    Ingår i Physical Review B. Condensed Matter and Materials Physics, s. 035129-, 2014.

  • Artikel i tidskrift

    Hantke, Max F.; Hasse, Dirk; Maia, Filipe R. N. C.; Ekeberg, Tomas et al.

    High-throughput imaging of heterogeneous cell organelles with an X-ray laser

    Ingår i Nature Photonics, s. 943-949, 2014.

  • Artikel i tidskrift

    Weierstall, Uwe; James, Daniel; Wang, Chong; White, Thomas A. et al.

    Lipidic cubic phase injector facilitates membrane protein serial femtosecond crystallography

    Ingår i Nature Communications, s. 3309-, 2014.

  • Konferensbidrag

    Fuchs, M.a b; Trigo, M.b c; Chen, J.b; Ghimire, S.b et al.

    Nonlinear X-ray compton scattering

    2014.

  • Artikel i tidskrift

    Kupitz, Christopher; Basu, Shibom; Grotjohann, Ingo; Fromme, Raimund et al.

    Serial time-resolved crystallography of photosystem II using a femtosecond X-ray laser

    Ingår i Nature, s. 261-265, 2014.

  • Artikel i tidskrift

    Bielecki, Johan; Parker, Stewart F.; Ekanayake, Dharshani; Rahman, Seikh M. H. et al.

    Short-range structure of the brownmillerite-type oxide Ba2In2O5 and its hydrated proton-conducting form BaInO3H

    Ingår i Journal of Materials Chemistry A, s. 16915-16924, 2014.

  • Artikel i tidskrift

    Lindas, Ann-Christin; Chruszcz, Maksymilian; Bernander, Rolf; Valegård, Karin et al.

    Structure of crenactin, an archaeal actin homologue active at 90 degrees C

    Ingår i Acta Crystallographica Section D, s. 492-500, 2014.

  • Artikel i tidskrift

    Kern, Jan; Tran, Rosalie; Alonso-Mori, Roberto; Koroidov, Sergey et al.

    Taking snapshots of photosynthetic water oxidation using femtosecond X-ray diffraction and spectroscopy

    Ingår i Nature Communications, s. 4371-, 2014.

  • Konferensbidrag

    Leontowich, Adam F. G.; Aquila, Andrew; Stellato, Francesco; Bean, Richard et al.

    Characterizing the focus of a multilayer coated off-axis parabola for FLASH beam at lambda = 4.3 nm

    s. 87770-87770 2013.

  • Artikel i tidskrift

    Milathianaki, D.; Boutet, S.; Williams, G. J.; Higginbotham, A. et al.

    Femtosecond Visualization of Lattice Dynamics in Shock-Compressed Matter

    Ingår i Science, s. 220-223, 2013.

  • Konferensbidrag

    Timneanu, Nicusor; Iwan, B.; Andreasson, J.; Bergh, M. et al.

    Fragmentation of clusters and recombination induced by intense and ultrashort X-ray laser pulses

    Ingår i Damage To Vuv, Euv, And X-Ray Optics Iv; And Euv And X-Ray Optics, 2013.

  • Artikel i tidskrift

    Ge, X.; Boutu, W.; Gauthier, D.; Wang, F. et al.

    Impact of wave front and coherence optimization in coherent diffractive imaging

    Ingår i Optics Express, s. 11441-11447, 2013.

  • Artikel i tidskrift

    Pedersoli, E.; Loh, N. D.; Capotondi, F.; Hampton, C. Y. et al.

    Mesoscale morphology of airborne core-shell nanoparticle clusters: x-ray laser coherent diffraction imaging

    Ingår i Journal of Physics B, s. 164033-, 2013.

  • Artikel i tidskrift

    Redecke, Lars; Nass, Karol; Deponte, Daniel P; White, Thomas A et al.

    Natively Inhibited Trypanosoma brucei Cathepsin B Structure Determined by Using an X-ray Laser

    Ingår i Science, s. 227-230, 2013.

  • Artikel i tidskrift

    Philippe, Nadege; Legendre, Matthieu; Doutre, Gabriel; Coute, Yohann et al.

    Pandoraviruses: Amoeba Viruses with Genomes Up to 2.5 Mb Reaching That of Parasitic Eukaryotes

    Ingår i Science, s. 281-286, 2013.

  • Artikel i tidskrift

    Loh, N. Duane; Starodub, Dmitri; Lomb, Lukas; Hampton, Christina Y. et al.

    Sensing the wavefront of x-ray free-electron lasers using aerosol spheres

    Ingår i Optics Express, s. 12385-12394, 2013.

  • Artikel i tidskrift

    Liu, Wei; Wacker, Daniel; Gati, Cornelius; Han, Gye Won et al.

    Serial Femtosecond Crystallography of G Protein-Coupled Receptors

    Ingår i Science, s. 1521-1524, 2013.

  • Artikel i tidskrift

    Broeker, N. K.; Gohlke, U.; Müller, J. J.; Uetrecht, Charlotte et al.

    Single amino acid exchange in bacteriophage HK620 tailspike protein results in thousand-fold increase of its oligosaccharide affinity

    Ingår i Glycobiology, s. 59-68, 2013.

  • Artikel i tidskrift

    Hasse, Dirk; Andersson, Evalena; Carlsson, Gunilla; Masloboy, Axel et al.

    Structure of the Homodimeric Glycine Decarboxylase P-protein from Synechocystis sp PCC 6803 Suggests a Mechanism for Redox Regulation

    Ingår i Journal of Biological Chemistry, s. 35333-35345, 2013.

  • Artikel i tidskrift

    Martin, A. V.; Morgan, A. J.; Ekeberg, Tomas; Loh, N. D. et al.

    The extraction of single-particle diffraction patterns from a multiple-particle diffraction pattern

    Ingår i Optics Express, s. 15102-15112, 2013.

  • Artikel i tidskrift

    Park, Hyung Joo; Loh, N. Duane; Sierra, Raymond G.; Hampton, Christina Y. et al.

    Toward unsupervised single-shot diffractive imaging of heterogeneous particles using X-ray free-electron lasers

    Ingår i Optics Express, s. 28729-28742, 2013.

  • Doktorsavhandling, sammanläggning
    A1:107, Biomedical Center (BMC), Husargatan 3, Uppsala 2012-11-09 kl 09:00

    Iwan, Bianca

    Creating and Probing Extreme States of Materials: From Gases and Clusters to Biosamples and Solids

  • Artikel i tidskrift

    Iwan, Bianca; Andreasson, Jakob; Bergh, Magnus; Schorb, Sebastian et al.

    Explosion, ion acceleration and molecular fragmentation of methane clusters in the pulsed beam of a free-electron laser

    Ingår i Physical Review A. Atomic, Molecular, and Optical Physics, s. 033201-, 2012.

  • Artikel i tidskrift

    Thomas, H.; Helal, A.; Hoffmann, K.; Kandadai, N. et al.

    Explosions of Xenon Clusters in Ultraintense Femtosecond X-Ray Pulses from the LCLS Free Electron Laser

    Ingår i Physical Review Letters, 2012.

  • Artikel i tidskrift

    Kassemeyer, Stephan; Steinbrener, Jan; Lomb, Lukas; Hartmann, Elisabeth et al.

    Femtosecond free-electron laser x-ray diffraction data sets for algorithm development

    Ingår i Optics Express, s. 4149-4158, 2012.

  • Doktorsavhandling, sammanläggning
    B22, BMC, Husargatan 3, Uppsala 2012-10-05 kl 09:15

    Ekeberg, Tomas

    Flash Diffractive Imaging in Three Dimensions

  • Artikel i tidskrift

    Loh, N. D.; Hampton, C. Y.; Martin, A. V.; Starodub, D. et al.

    Fractal morphology, imaging and mass spectrometry of single aerosol particles in flight

    Ingår i Nature, s. 513-517, 2012.

  • Artikel i tidskrift

    Boutet, Sébastien; Lomb, Lukas; Williams, Garth J; Barends, Thomas R M et al.

    High-resolution protein structure determination by serial femtosecond crystallography

    Ingår i Science, s. 362-364, 2012.

  • Artikel i tidskrift

    Koopmann, Rudolf; Cupelli, Karolina; Redecke, Lars; Nass, Karol et al.

    In vivo protein crystallization opens new routes in structural biology

    Ingår i Nature Methods, s. 259-262, 2012.

  • Artikel i tidskrift

    Johansson, Linda C; Arnlund, David; White, Thomas A; Katona, Gergely et al.

    Lipidic phase membrane protein serial femtosecond crystallography

    Ingår i Nature Methods, s. 263-265, 2012.

  • Konferensbidrag

    Caleman, Carl; Tîmneanu, Nicusor; Martin, A. V.; White, T. A. et al.

    Modeling of XFEL induced ionization and atomic displacement in protein nanocrystals

    Ingår i Proceedings of SPIE, s. 85040H-, 2012.

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    Cryan, J P; Glownia, J M; Andreasson, Jakob; Belkacem, A et al.

    Molecular frame Auger electron energy spectrum from N2

    Ingår i Journal of Physics B, s. 055601-, 2012.

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    Martin, A. V.; Wang, F.; Loh, N. D.; Ekeberg, Tomas et al.

    Noise-robust coherent diffractive imaging with a single diffraction pattern

    Ingår i Optics Express, s. 16650-16661, 2012.

  • Konferensbidrag

    Duane Loh, N.; Starodub, D.; Lomb, L.; Hampton, C. Y. et al.

    Profiling structured beams using injected aerosols

    Ingår i Proceedings of SPIE, s. 850403-, 2012.

  • Artikel i tidskrift

    Barty, Anton; Caleman, Carl; Aquila, Andrew; Timneanu, Nicusor et al.

    Self-terminating diffraction gates femtosecond X-ray nanocrystallography measurements

    Ingår i Nature Photonics, s. 35-40, 2012.

  • Artikel i tidskrift

    Aquila, Andrew; Hunter, Mark S.; Doak, R. Bruce; Kirian, Richard A. et al.

    Time-resolved protein nanocrystallography using an X-ray free-electron laser

    Ingår i Optics Express, s. 2706-2716, 2012.

  • Artikel i tidskrift

    Chapman, Henry N.; Fromme, Petra; Barty, Anton; White, Thomas A. et al.

    Femtosecond X-ray protein nanocrystallography

    Ingår i Nature, s. 73-77, 2011.

  • Konferensbidrag

    Iwan, B.; Andreasson, J.; Abreu, E.; Bergh, M. et al.

    Modeling of soft X-ray induced ablation in solids

    Ingår i DAMAGE TO VUV, EUV, AND X-RAY OPTICS III, 2011.

  • Artikel i tidskrift

    Pedersoli, Emanuele; Capotondi, Flavio; Cocco, Daniele; Zangrando, Marco et al.

    Multipurpose modular experimental station for the DiProI beamline of Fermi@Elettra free electron laser

    Ingår i Review of Scientific Instruments, s. 043711-, 2011.

  • Artikel i tidskrift

    Caleman, Carl; Huldt, Gösta; Maia, Filipe R. N. C.; Ortiz, Carlos et al.

    On the Feasibility of Nanocrystal Imaging Using Intense and Ultrashort X-ray Pulses

    Ingår i ACS Nano, s. 139 139-146 146, 2011.

  • Artikel i tidskrift

    Lomb, Lukas; Barends, Thomas R. M.; Kassemeyer, Stephan; Aquila, Andrew et al.

    Radiation damage in protein serial femtosecond crystallography using an x-ray free-electron laser

    Ingår i Physical Review B. Condensed Matter and Materials Physics, s. 214111-1-214111-6, 2011.

  • Artikel i tidskrift

    Andreasson, Jakob; Iwan, Bianca Stella; Andrejczuk, A.; Abreu, E. et al.

    Saturated ablation in metal hydrides and acceleration of protons and deuterons to keV energies with a soft-x-ray laser

    Ingår i Physical Review E. Statistical, Nonlinear, and Soft Matter Physics, s. 016403-, 2011.

  • Artikel i tidskrift

    Caleman, Carl; Bergh, Magnus; Scott, Howard A.; Spence, John C. H. et al.

    Simulations of radiation damage in biomolecular nanocrystals induced by femtosecond X-ray pulses

    Ingår i Journal of Modern Optics, s. 1486-1497, 2011.

  • Artikel i tidskrift

    Seibert, M. Marvin; Ekeberg, Tomas; Maia, Filipe R. N. C.; Svenda, Martin et al.

    Single mimivirus particles intercepted and imaged with an X-ray laser

    Ingår i Nature, s. 78-81, 2011.

  • Artikel i tidskrift

    Kirian, Richard A.; White, Thomas A.; Holton, James M.; Chapman, Henry N. et al.

    Structure-factor analysis of femtosecond micro-diffraction patterns from protein nanocrystals

    Ingår i Acta Crystallographica Section A, s. 131-140, 2011.

  • Artikel i tidskrift

    Iwan, Bianca S; Andreasson, Jakob; Andrejczuk, A.; Abreu, E. et al.

    TOF-OFF: A method for determining focal positions in tightly focused free-electron laser experiments by measurement of ejected ions

    Ingår i High Energy Density Physics, s. 336 336-342 342, 2011.

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    Yoon, Chun Hong; Schwander, Peter; Abergel, Chantal; Andersson, Inger et al.

    Unsupervised classification of single-particle X-ray diffraction snapshots by spectral clustering

    Ingår i Optics Express, s. 16542-16549, 2011.

  • Konferensbidrag

    Hajkova, V.; Juha, L.; Bohacek, P.; Burian, T. et al.

    X-ray laser-induced ablation of lead compounds

    Ingår i DAMAGE TO VUV, EUV, AND X-RAY OPTICS III, 2011.

  • Artikel i tidskrift

    Bogan, Michael J.; Boutet, Sebastien; Chapman, Henry N.; Marchesini, Stefano et al.

    Aerosol Imaging with a Soft X-Ray Free Electron Laser

    Ingår i Aerosol Science and Technology, s. I-VI, 2010.

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    Cryan, James P.; Glownia, J. M.; Andreasson, Jakob; Belkacem, A. et al.

    Auger Electron Angular Distribution of Double Core-Hole States in the Molecular Reference Frame

    Ingår i Physical Review Letters, s. 083004-, 2010.

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    Loh, N. D.; Bogan, M. J.; Elser, V.; Barty, A. et al.

    Cryptotomography: Reconstructing 3D Fourier Intensities from Randomly Oriented Single-Shot Diffraction Patterns

    Ingår i Physical Review Letters, s. 225501-1-225501-5, 2010.

  • Artikel i tidskrift

    Vinko, S. M.; Zastrau, U.; Mazevet, S.; Andreasson, Jakob et al.

    Electronic Structure of an XUV Photogenerated Solid-Density Aluminum Plasma

    Ingår i Physical Review Letters, s. 225001-, 2010.

  • Artikel i tidskrift

    Seibert, M. Marvin; Boutet, Sebastien; Svenda, Martin; Ekeberg, Tomas et al.

    Femtosecond diffractive imaging of biological cells

    Ingår i Journal of Physics B, s. 194015-, 2010.

  • Artikel i tidskrift

    Maia, Filipe R. N. C.; Ekeberg, Tomas; van der Spoel, David; Hajdu, Janos et al.

    Hawk: the image reconstruction package for coherent X-ray diffractive imaging

    Ingår i Journal of applied crystallography, s. 1535-1539, 2010.

  • Doktorsavhandling, sammanläggning
    B21, Husargatan 3, 751 24 Uppsala, BMC 2010-04-20 kl 10:15

    Seibert, Mark Marvin

    Protein Folding and DNA Origami

  • Artikel i tidskrift

    Hau-Riege, Stefan P.; Boutet, Sebastien; Barty, Anton; Bajt, Sasa et al.

    Sacrificial Tamper Slows Down Sample Explosion in FLASH Diffraction Experiments

    Ingår i Physical Review Letters, s. 064801-, 2010.

  • Konferensbidrag

    Tajima, Toshiki; Barish, Barry C.; Barty, C. P.; Bulanov, Sergei et al.

    Science of Extreme Light Infrastructure

    Ingår i LIGHT AT EXTREME INTENSITIES, s. 11-35, 2010.

  • Konferensbidrag

    Sokolowski-Tinten, Klaus; Barty, Anton; Boutet, Sebastien; Shymanovich, Uladzimir et al.

    Short-pulse Laser Induced Transient Structure Formation and Ablation Studied with Time-resolved Coherent XUV-scattering

    Ingår i INTERNATIONAL SYMPOSIUM ON HIGH POWER LASER ABLATION 2010, s. 373-379, 2010.

  • Artikel i tidskrift

    Bogan, M. J.; Boutet, S.; Barty, A.; Benner, W. H. et al.

    Single-shot femtosecond x-ray diffraction from randomly oriented ellipsoidal nanoparticles

    Ingår i Physical Review Special Topics. Accelerators and Beams, s. 094701-, 2010.

  • Artikel i tidskrift

    Glownia, James M.; Cryan, J.; Andreasson, Jakob; Belkacem, A. et al.

    Time-resolved pump-probe experiments at the LCLS

    Ingår i Optics Express, s. 17620-17630, 2010.

  • Doktorsavhandling, sammanläggning
    B41, BMC, Husargatan 3, Uppsala 2010-05-14 kl 13:15

    R. N. C. Maia, Filipe

    Ultrafast Coherent X-ray Diffractive Nanoimaging

  • Artikel i tidskrift

    Chapman, H N; Bajt, S; Barty, A; Benner, W H et al.

    Coherent imaging at FLASH

    Ingår i Journal of Physics, Conference Series, s. 012051-, 2009.

  • Artikel i tidskrift

    Wang, Conan K; Hu, Shu-Hong; Martin, Jennifer L; Sjögren, Tove et al.

    Combined X-ray and NMR Analysis of the Stability of the Cyclotide Cystine Knot Fold That Underpins Its Insecticidal Activity and Potential Use as a Drug Scaffold

    Ingår i Journal of Biological Chemistry, s. 10672-10683, 2009.

  • Artikel i tidskrift

    Caleman, Carl; Ortiz, Carlos; Marklund, Erik; Bultmark, Fredrik et al.

    Radiation damage in biological material: electronic properties and electron impact ionization in urea

    Ingår i Europhysics letters, s. 18005-, 2009.

  • Artikel i tidskrift

    Nelson, A. J.; Toleikis, S.; Chapman, H.; Bajt, S. et al.

    Soft x-ray free electron laser microfocus for exploring matter under extreme conditions

    Ingår i Optics Express, s. 18271-18278, 2009.

  • Artikel i tidskrift

    Jackson, Graham E; Mabula, Andre N; Stone, Shane R; Gäde, Gerd et al.

    Solution conformations of an insect neuropeptide: crustacean cardioactive peptide (CCAP)

    Ingår i Peptides, s. 557-564, 2009.

  • Artikel i tidskrift

    Maia, Filipe R. N. C.; Ekeberg, Tomas; Timneanu, Nicusor; van der Spoel, David et al.

    Structural variability and the incoherent addition of scattered intensities in single-particle diffraction

    Ingår i Physical Review E. Statistical, Nonlinear, and Soft Matter Physics, s. 031905-, 2009.

  • Artikel i tidskrift

    Hau-Riege, S. P.; London, R. A.; Bionta, R. M.; Ryutov, D. et al.

    Wavelength dependence of the damage threshold of inorganic materials under extreme-ultraviolet free-electron-laser irradiation

    Ingår i Applied Physics Letters, s. 111104-111104-3, 2009.

  • Artikel i tidskrift

    Patriksson, Alexandra; van der Spoel, David

    A temperature predictor for parallel tempering simulations

    Ingår i Physical Chemistry, Chemical Physics - PCCP, s. 2073-2077, 2008.

  • Artikel i tidskrift

    Behzadi, Hadi; Esrafili, Mehdi D; van der Spoel, David; Hadipour, Nasser L et al.

    A theoretical study of repeating sequence in HRP II: a combination of molecular dynamics simulations and (17)O quadrupole coupling tensors

    Ingår i Biophysical Chemistry, s. 76-80, 2008.

  • Artikel i tidskrift

    Bajt, Sasa; Chapman, Henry N; Spiller, Eberhard A; Alameda, Jennifer B et al.

    Camera for coherent diffractive imaging and holography with a soft-x-ray free-electron laser

    Ingår i Applied Optics, s. 1673-1683, 2008.

  • Artikel, forskningsöversikt

    Bergh, Magnus; Huldt, Gösta; Timneanu, Nicusor; Maia, Filipe R. N. C. et al.

    Feasibility of imaging living cells at subnanometer resolutions by ultrafast X-ray diffraction

    Ingår i Quarterly reviews of biophysics (Print), s. 181-204, 2008.

  • Artikel i tidskrift

    Gabrysch, Markus; Marklund, Erik; Hajdu, Janos; Twitchen, D. J. et al.

    Formation of secondary electron cascades in single-crystalline plasma-deposited diamond upon exposure to femtosecond x-ray pulses

    Ingår i Journal of Applied Physics, 2008.

  • Artikel i tidskrift

    Hess, Berk; Kutzner, Carsten; van der Spoel, David; Lindahl, Erik et al.

    GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation

    Ingår i Journal of Chemical Theory and Computation, s. 435-447, 2008.

  • Artikel i tidskrift

    Bergh, Magnus; Timneanu, Nicusor; Hau-Riege, S. P.; Scott, H. A. et al.

    Interaction of Ultrashort X-ray Pulses with B4C, SiC and Si

    Ingår i Physical Review E. Statistical, Nonlinear, and Soft Matter Physics, s. 026404-1-026404-8, 2008.

  • Artikel i tidskrift

    Bogan, Michael J; Benner, W Henry; Boutet, Sébastien; Rohner, Urs et al.

    Single particle X-ray diffractive imaging

    Ingår i Nano letters (Print), s. 310-6, 2008.

  • Artikel i tidskrift

    Lejon, Sara; Ellis, Jacqueline; Valegård, Karin

    The last step in cephalosporin C formation revealed: Crystal Structures of Deacetylcephalosporin C Acetyltransferase from Acremonium chrysogenum in Complexes with Reaction Intermediates

    Ingår i Journal of Molecular Biology, s. 935-944, 2008.

  • Artikel i tidskrift

    Lejon, Sara; Ellis, Jacqueline; Valegård, Karin

    The last step in cephalosporin C formation revealed: Crystal Structures of Deacetylcephalosporin C Acetyltransferase from Acremonium chrysogenum in Complexes with Reaction Intermediates

    Ingår i Journal of Molecular Biology, s. 935-944, 2008.

  • Artikel i tidskrift

    Chalupsky, J.; Juha, L.; Kuba, J.; Cihelka, J. et al.

    Characteristics of focused soft X-ray free-electron laser beam determined by ablation of organic molecular solids

    Ingår i Optics Express, s. 6036-6043, 2007.

  • Artikel i tidskrift

    Hau-Riege, Stefan P.; London, Richard A.; Chapman, Henry N.; Szöke, Abraham et al.

    Encapsulation and diffraction-pattern-correction methods to reduce the effect of damage in x-ray diffraction imaging of single biological molecules

    Ingår i Physical Review Letters, s. 198302-, 2007.

  • Artikel i tidskrift

    Chapman, Henry N; Hau-Riege, Stefan P; Bogan, Michael J; Bajt, Sasa et al.

    Femtosecond time-delay X-ray holography

    Ingår i Nature, s. 676-679, 2007.

  • Doktorsavhandling, sammanläggning
    B42, BMC, Husargatan 3, Uppsala 2007-05-11 kl 13:15

    Raber, Johan

    Quantum Chemical Studies of Chemotherapeutic Drug Cisplatin: Activation and Binding to DNA

  • Doktorsavhandling, sammanläggning
    B41, Biomedical Centre, Husargatan 3, Uppsala 2007-06-07 kl 09:15

    Caleman, Carl

    Towards Single Molecule Imaging - Understanding Structural Transitions Using Ultrafast X-ray Sources and Computer Simulations

  • Artikel i tidskrift

    Adams, Christopher; Kjeldsen, Frank; Patriksson, Alexandra; van Der Spoel, David et al.

    Probing Solution-Phase and Gas-Phase Structures of Trp-cage Cations by Chiral Substitution and Spectroscopic Techniques

    Ingår i International Journal of Mass Spectrometry, s. 263-273, 2006.

  • Artikel i tidskrift

    van der Spoel, David; Seibert, M Marvin

    Protein folding kinetics and thermodynamics from atomistic simulations

    Ingår i Physical Review Letters, s. 238102-, 2006.

  • Artikel i tidskrift

    Caleman, Carl; van der Spoel, David

    Temperature and structural changes of water in vacuum due to evaporation

    Ingår i Journal of Chemical Physics, s. 154508-, 2006.

  • Artikel i tidskrift

    Zhu, Chuanbao; Raber, Johan; Eriksson, Leif A.

    Hydrolysis Process of the Second Generation Platinum-Based Anticancer Drug cis-Amminedichlorocyclohexylamineplatinum(II)

    Ingår i The Journal of Physical Chemistry B, s. 12195-12205, 2005.

  • Artikel i tidskrift

    Harbst, M.; Hansen, T. N.; Caleman, Carl; Fullagar, W.K. et al.

    Studies if resolidification of non-thermally molten InSb using time-resolved X-ray diffraction

    Ingår i Applied Physics A, s. 893 893-900 900, 2005.

  • Artikel i tidskrift

    Raber, Johan; Zhu, Chuanbao; Eriksson, Leif A.

    Theoretical Study of Cisplatin Binding to DNA: The Importance of Initial Complex Stabilization

    Ingår i The Journal of Physical Chemistry B, s. 11006-11015, 2005.

  • Artikel i tidskrift

    Timneanu, Nicusor; Caleman, Carl; Hajdu, Janos; van der Spoel, David et al.

    Auger electron cascades in water and ice

    Ingår i Chemical Physics, s. 277-283, 2004.

  • Artikel i tidskrift

    Bergh, Magnus; Timneanu, Nicusor; van der Spoel, David

    Model for the Dynamics of a Water Cluster in an X-ray Free Electron Laser Beam

    Ingår i Physical Review E. Statistical, Nonlinear, and Soft Matter Physics, s. 051904-, 2004.

  • Artikel i tidskrift

    Raber, Johan; Zhu, Chuanbao; Eriksson, Leif A.

    The Activation of Anti-Cancer Drug Cisplatin – is the Activated Complex Fully Aquated?

    Ingår i Molecular Physics, s. 2537-2544, 2004.

  • Kapitel i bok, del av antologi

    Raber, Johan; Llano, Jorge; Eriksson, Leif A.

    Density-functional Theory in Drug Design – the Chemistry of the Anti-tumor Drug Cisplatin and Photoactive Psoralen Compounds

    Ingår i Quantum Medicinal Chemistry, s. 113-153, 2003.

  • Manuskript (preprint)

    Ekeberg, Tomas; Maia, Filipe

    Data requirements for single-particle diffractive imaging

  • Artikel i tidskrift

    Östlin, Christofer; Timneanu, Nicusor; Jönsson, H. Olof; Ekeberg, Tomas et al.

    Explosion Mapping to aid Spatial Orientation in Single Particle Imaging with X-ray Lasers

    Ingår i Physical Chemistry, Chemical Physics - PCCP

  • Manuskript (preprint)

    Seibert, M. Marvin

    Flexibility of scaffolded DNA origami

  • Manuskript (preprint)

    Caleman, Carl; Huldt, Gösta; Ortiz, Carlos; Maia, Filipe R. N. C. et al.

    Nanocrystal imaging using intense and ultrashort X-ray pulses

  • Manuskript (preprint)

    Ekeberg, Tomas; Svenda, Martin; Abergel, Chantal; Maia, Filipe et al.

    Three-dimensional structure determination with an X-ray laser

  • Manuskript (preprint)

    Andreasson, Jakob; Timneanu, Nicusor; Iwan, Bianca; Hantke, Max et al.

    Time of Flight Mass Spectrometry to Monitor Sample Expansion in Flash Diffraction Studies on Single Virus Particles

  • Manuskript (preprint)

    Daurer, Benedikt J; Simone, Sala; Hantke, Max; Reddy, Hemanth et al.

    Wavefront sensing of individual XFEL pulses using ptychography