Department of Cell and Molecular Biology
  • Södersten, Erik; Toskas, Konstantinos; Rraklli, Vilma; Tiklova, Katarina et al.

    A comprehensive map coupling histone modifications with gene regulation in adult dopaminergic and serotonergic neurons

    Part of Nature Communications, 2018.

  • Bergin, Claudia; Wentrup, C.; Brewig, N.; Blazejak, A. et al.

    Acquisition of a Novel Sulfur-Oxidizing Symbiont in the Gutless Marine Worm Inanidrilus exumae

    Part of Applied and Environmental Microbiology, 2018.

  • Ahmed, Engy; Parducci, Laura; Unneberg, Per; Ågren, Rasmus et al.

    Archaeal community changes in Lateglacial lake sediments: Evidence from ancient DNA

    Part of Quaternary Science Reviews, p. 19-29, 2018.

  • Spang, Anja; Eme, Laura; Saw, Jimmy H.; Fernández Cáceres, Eva et al.

    Asgard archaea are the closest prokaryotic relatives of eukaryotes

    Part of PLoS Genetics, 2018.

  • Garcia, Sarahi L; Stevens, Sarah L R; Crary, Benjamin; Martinez-Garcia, Manuel et al.

    Contrasting patterns of genome-level diversity across distinct co-occurring bacterial populations

    Part of The ISME Journal, p. 742-755, 2018.

  • Martijn, Joran; Vosseberg, Julian; Guy, Lionel; Offre, Pierre et al.

    Deep mitochondrial origin outside the sampled alphaproteobacteria

    Part of Nature, p. 101-105, 2018.

  • Leger, Michelle M.; Eme, Laura; Stairs, Courtney W.; Roger, Andrew J. et al.

    Demystifying Eukaryote Lateral Gene Transfer

    Part of Bioessays, 2018.

  • Ling, Jiaxin; Smura, Teemu; Tamarit, Daniel; Huitu, Otso et al.

    Evolution and postglacial colonization of Seewis hantavirus with Sorex araneus in Finland

    Part of Infection, Genetics and Evolution, p. 88-97, 2018.

  • Giacomello, Stefania; Asp, Michaela; Wärdell, Eva; Reimegård, Johan et al.

    New insights into the human heart development using a combined spatial and single-cell transcriptomics approach

    Part of HUMAN GENOMICS, p. 50 50-51 51, 2018.

  • Tamarit, Daniel; Neuvonen, Minna M.; Engel, Philipp; Guy, Lionel et al.

    Origin and evolution of the Bartonella Gene Transfer Agent

    Part of Molecular biology and evolution, p. 451-464, 2018.

  • Maric, Jovana; Ravindran, Avinash; Mazzurana, Luca; Björklund, Åsa K. et al.

    Prostaglandin E-2 suppresses human group 2 innate lymphoid cell function

    Part of Journal of Allergy and Clinical Immunology, p. 1761-1773.e6, 2018.

  • Baiao, Guilherme Costa; Forshage, Mattias

    Revision of the West Palaearctic species of Rhoptromeris Forster, 1869 (Hymenoptera: Figitidae: Eucoilinae)

    Part of Journal of Natural History, p. 1201-1224, 2018.

  • Onsbring, Henning; Jamy, Mahwash; Ettema, Thijs J. G.

    RNA Sequencing of Stentor Cell Fragments Reveals Transcriptional Changes during Cellular Regeneration

    Part of Current Biology, p. 1281-1288.e3, 2018.

  • Franco, Irene; Johansson, Anna C. V.; Olsson, Karl; Vrtacnik, Peter et al.

    Somatic mutagenesis in satellite cells associates with human skeletal muscle aging

    Part of Nature Communications, 2018.

  • Urbina, Hector; Breed, Martin F.; Zhao, Weizhou; Gurrala, Kanaka Lakshmi et al.

    Specificity in Arabidopsis thaliana recruitment of root fungal communities from soil and rhizosphere

    Part of Fungal Biology, p. 231-240, 2018.

  • Raina, Jean-Baptiste; Eme, Laura; Pollock, F. Joseph; Spang, Anja et al.

    Symbiosis in the microbial world: from ecology to genome evolution

    Part of BIOLOGY OPEN, 2018.

  • Hagström, Erik; Andersson, Siv G. E.

    The challenges of integrating two genomes in one cell

    Part of Current Opinion in Microbiology, p. 89-94, 2018.

  • Hotopp, Julie C. Dunning; Klasson, Lisa

    The Complexities and Nuances of Analyzing the Genome of Drosophila ananassae and Its Wolbachia Endosymbiont

    Part of G3, p. 373-374, 2018.

  • Yutin, Natalya; Bäckstrom, Disa; Ettema, Thijs J G; Krupovic, Mart et al.

    Vast diversity of prokaryotic virus genomes encoding double jelly-roll major capsid proteins uncovered by genomic and metagenomic sequence analysis

    Part of Virology Journal, 2018.

  • Eme, Laura; Spang, Anja; Lombard, Jonathan; Stairs, Courtney W. et al.

    Archaea and the origin of eukaryotes

    Part of Nature Reviews Microbiology, p. 711-723, 2017.

  • Spang, Anja; Ettema, Thijs J. G.

    Archaeal evolution: The methanogenic roots of Archaea

    Part of Nature Microbiology, 2017.

  • Zaremba-Niedzwiedzka, Katarzyna; Fernández Cáceres, Eva; Saw, Jimmy Hser Wah; Bäckström, Disa et al.

    Asgard archaea illuminate the origin of eukaryotic cellular complexity

    Part of Nature, p. 353-+, 2017.

  • Ma'ayeh, Showgy Y.; Liu, Jingyi; Peirasmaki, Dimitra; Hörnaeus, Katarina et al.

    Characterization of the Giardia intestinalis secretome during interaction with human intestinal epithelial cells: The impact on host cells

    Part of PLoS Neglected Tropical Diseases, 2017.

  • Gomez-Velazquez, Melisa; Badia-Careaga, Claudio; Victoria Lechuga-Vieco, Ana; Nieto-Arellano, Rocio et al.

    CTCF counter-regulates cardiomyocyte development and maturation programs in the embryonic heart

    Part of PLoS Genetics, 2017.

  • Ponce-de-Leon, Miguel; Tamarit, Daniel; Calle-Espinosa, Jorge; Mori, Matteo et al.

    Determinism and Contingency Shape Metabolic Complementation in an Endosymbiotic Consortium

    Part of Frontiers in Microbiology, 2017.

  • Clement, Yves; Sarah, Gautier; Holtz, Yan; Homa, Felix et al.

    Evolutionary forces affecting synonymous variations in plant genomes

    Part of PLoS Genetics, 2017.

  • B/B22, Biomedical Center (BMC), Husargatan 3, Uppsala 2017-09-29 09:15

    Martijn, Joran

    Exploration of microbial diversity and evolution through cultivation independent phylogenomics

  • Gentekaki, Eleni; Curtis, Bruce A.; Stairs, Courtney W.; Klimes, Vladimir et al.

    Extreme genome diversity in the hyper-prevalent parasitic eukaryote Blastocystis

    Part of PLoS biology, 2017.

  • James, Rory Hennell; Caceres, Eva F.; Escasinas, Alex; Alhasan, Haya et al.

    Functional reconstruction of a eukaryotic-like E1/E2/(RING) E3 ubiquitylation cascade from an uncultured archaeon

    Part of Nature Communications, 2017.

  • Steige, Kim A.; Laenen, Benjamin; Reimegård, Johan; Scofield, Douglas G. et al.

    Genomic analysis reveals major determinants of cis-regulatory variation in Capsella grandiflora

    Part of Proceedings of the National Academy of Sciences of the United States of America, p. 1087-1092, 2017.

  • Spang, Anja; Caceres, Eva F.; Ettema, Thijs J. G.

    Genomic exploration of the diversity, ecology, and evolution of the archaeal domain of life.

    Part of Science, 2017.

  • Bergman, Ebba

    Haplotype Inference as a caseof Maximum Satisfiability: A strategy for identifying multi-individualinversion points in computational phasing

    2017.

  • Strawbridge, Rona J.; Silveira, Angela; den Hoed, Marcel; Gustafsson, Stefan et al.

    Identification of a novel proinsulin-associated SNP and demonstration that proinsulin is unlikely to be a causal factor in subclinical vascular remodelling using Mendelian randomisation

    Part of Atherosclerosis, p. 196-204, 2017.

  • Le Rhun, Anais; Lecrivain, Anne-Laure; Reimegård, Johan; Proux-Wera, Estelle et al.

    Identification of endoribonuclease specific cleavage positions reveals novel targets of RNase III in Streptococcus pyogenes

    Part of Nucleic Acids Research, p. 2329-2340, 2017.

  • Williams, Tom A.; Szollosi, Gergely J.; Spang, Anja; Foster, Peter G. et al.

    Integrative modeling of gene and genome evolution roots the archaeal tree of life

    Part of Proceedings of the National Academy of Sciences of the United States of America, p. E4602-E4611, 2017.

  • Starnawski, Piotr; Bataillon, Thomas; Ettema, Thijs J. G.; Jochum, Lara M. et al.

    Microbial community assembly and evolution in subseafloor sediment

    Part of Proceedings of the National Academy of Sciences of the United States of America, p. 2940-2945, 2017.

  • Leger, Michelle M.; Kolisko, Martin; Kamikawa, Ryoma; Stairs, Courtney W. et al.

    Organelles that illuminate the origins of Trichomonas hydrogenosomes and Giardia mitosomes

    Part of NATURE ECOLOGY & EVOLUTION, 2017.

  • Zhu, Yafeng; Engstrom, Par G.; Tellgren-Roth, Christian; Baudo, Charles D. et al.

    Proteogenomics produces comprehensive and highly accurate protein-coding gene annotation in a complete genome assembly of Malassezia sympodialis

    Part of Nucleic Acids Research, p. 2629-2643, 2017.

  • Kee, Nigel; Volakakis, Nikolaos; Kirkeby, Agnete; Dahl, Lina et al.

    Single-Cell Analysis Reveals a Close Relationship between Differentiating Dopamine and Subthalamic Nucleus Neuronal Lineages

    Part of Cell Stem Cell, p. 29-40, 2017.

  • Giacomello, Stefania; Salmen, Fredrik; Terebieniec, Barbara K.; Vickovic, Sanja et al.

    Spatially resolved transcriptome profiling in model plant species

    Part of NATURE PLANTS, 2017.

  • Ameur, Adam; Dahlberg, Johan; Olason, Pall; Vezzi, Francesco et al.

    SweGen: a whole-genome data resource of genetic variability in a cross-section of the Swedish population

    Part of European Journal of Human Genetics, p. 1253-1260, 2017.

  • Sun, Yu; Tamarit, Daniel; Andersson, Siv

    Switches in Genomic GC Content Drive Shifts of Optimal Codons under Sustained Selection on Synonymous Sites

    Part of Genome Biology and Evolution, p. 2560-2579, 2017.

  • Marshall, Ian P. G.; Starnawski, Piotr; Cupit, Carina; Fernández Cáceres, Eva et al.

    The novel bacterial phylum Calditrichaeota is diverse, widespread and abundant in marine sediments and has the capacity to degrade detrital proteins

    Part of Environmental Microbiology Reports, p. 397-403, 2017.

  • Klasson, Lisa

    The unpredictable road to reduction

    Part of Nature ecology and evolution, p. 1062 1062-1063 1063, 2017.

  • Seeger, Christian; Butler, Margaret K.; Yee, Benjamin; Mahajan, Mayank et al.

    Tuwongella immobilis gen. nov., sp nov., a novel non-motile bacterium within the phylum Planctomycetes

    Part of International Journal of Systematic and Evolutionary Microbiology, p. 4923-4929, 2017.

  • Björkholm, Patrik; Ernst, Andreas M.; Hagström, Erik; Andersson, Siv G. E. et al.

    Why mitochondria need a genome revisited

    Part of FEBS Letters, p. 65-75, 2017.

  • Humble, E.; Martinez-Barrio, Alvaro; Forcada, J.; Trathan, P. N. et al.

    A draft fur seal genome provides insights into factors affecting SNP validation and how to mitigate them

    Part of Molecular Ecology Resources, p. 909-921, 2016.

  • Schulz, Frederik; Martijn, Joran; Wascher, Florian; Lagkouvardos, Ilias et al.

    A Rickettsiales symbiont of amoebae with ancient features

    Part of Environmental Microbiology, p. 2326-2342, 2016.

  • Reischauer, Sven; Stone, Oliver A.; Villasenor, Alethia; Chi, Neil et al.

    Cloche is a bHLH-PAS transcription factor that drives haemato-vascular specification

    Part of Nature, p. 294-+, 2016.

  • Troell, Karin; Hallstrom, Bjorn; Divne, Anna-Maria; Alsmark, Cecilia et al.

    Cryptosporidium as a testbed for single cell genome characterization of unicellular eukaryotes

    Part of BMC Genomics, 2016.

  • B41, Biomedical Center (BMC), Husargatan 3, Uppsala 2016-10-14 09:15

    Tamarit, Daniel

    Evolution of symbiotic lineages and the origin of new traits

  • Baker, Brett J.; Saw, Jimmy H.; Lind, Anders E.; Lazar, Cassandre Sara et al.

    Genomic inference of the metabolism of cosmopolitan subsurface Archaea, Hadesarchaea

    Part of Nature Microbiology, 2016.

  • Heyworth, Eleanor R.; Ferrari, Julia

    Heat Stress Affects Facultative Symbiont-Mediated Protection from a Parasitoid Wasp

    Part of PLoS ONE, 2016.

  • Corcoran, Padraic; Anderson, Jennifer L; Jacobson, David J; Sun, Yu et al.

    Introgression maintains the genetic integrity of the mating-type determining chromosome of the fungus Neurospora tetrasperma.

    Part of Genome Research, p. 486-498, 2016.

  • Spang, Anja; Ettema, Thijs J. G.

    Microbial Diversity: The tree of life comes of age

    Part of Nature Microbiology, 2016.

  • Ettema, Thijs J. G.

    Mitochondria in the second act

    Part of Nature, p. 39-40, 2016.

  • Hammond, Maria; Homa, Felix; Andersson-Svahn, Helene; Ettema, Thijs J. G. et al.

    Picodroplet partitioned whole genome amplification of low biomass samples preserves genomic diversity for metagenomic analysis

    Part of Microbiome, 2016.

  • Le Rhun, Anais; Beer, Yan Yan; Reimegård, Johan; Chylinski, Krzysztof et al.

    RNA sequencing uncovers antisense RNAs and novel small RNAs in Streptococcus pyogenes

    Part of RNA Biology, p. 177-195, 2016.

  • Andersson, Siv G. E.

    Stress management strategies in single bacterial cells

    Part of Proceedings of the National Academy of Sciences of the United States of America, p. 3921-3923, 2016.

  • Martínez Barrio, Álvaro; Lamichhaney, Sangeet; Fan, Guangyi; Rafati, Nima et al.

    The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing

    Part of eLIFE, 2016.

  • Neuvonen, Minna M.; Tamarit, Daniel; Näslund, Kristina; Liebig, Juergen et al.

    The genome of Rhizobiales bacteria in predatory ants indicates a role for urease in lifestyle switches

    2016.

  • Neuvonen, Minna M.; Tamarit, Daniel; Näslund, Kristina; Liebig, Juergen et al.

    The genome of Rhizobiales bacteria in predatory ants reveals urease gene functions but no genes for nitrogen fixation

    Part of Scientific Reports, p. 1-11, 2016.

  • Björklund, Åsa K.; Forkel, Marianne; Picelli, Simone; Konya, Viktoria et al.

    The heterogeneity of human CD127(+) innate lymphoid cells revealed by single-cell RNA sequencing

    Part of Nature Immunology, p. 451-460, 2016.

  • Klinger, Christen M.; Spang, Anja; Dacks, Joel B.; Ettema, Thijs J. G. et al.

    Tracing the Archaeal Origins of Eukaryotic Membrane-Trafficking System Building Blocks

    Part of Molecular biology and evolution, p. 1528-1541, 2016.

  • Eiler, Alexander; Mondav, Rhiannon; Sinclair, Lucas; Fernandez-Vidal, Leyden et al.

    Tuning fresh: radiation through rewiring of central metabolism in streamlined bacteria

    Part of The ISME Journal, p. 1902-1914, 2016.

  • Saenko, Suzanne V.; Lamichhaney, Sangeet; Barrio, Alvaro Martinez; Rafati, Nima et al.

    Amelanism in the corn snake is associated with the insertion of an LTR-retrotransposon in the OCA2 gene

    Part of Scientific Reports, 2015.

  • Steige, Kim A.; Reimegård, Johan; Koenig, Daniel; Scofield, Douglas G. et al.

    Cis-Regulatory Changes Associated with a Recent Mating System Shift and Floral Adaptation in Capsella

    Part of Molecular biology and evolution, p. 2501-2514, 2015.

  • Ankarklev, Johan; Franzen, Oscar; Peirasmaki, Dimitra; Jerlstrom-Hultqvist, Jon et al.

    Comparative genomic analyses of freshly isolated Giardia intestinalis assemblage A isolates

    Part of BMC Genomics, 2015.

  • Spang, Anja; Saw, Jimmy H.; Jorgensen, Steffen L.; Zaremba-Niedzwiedzka, Katarzyna et al.

    Complex archaea that bridge the gap between prokaryotes and eukaryotes

    Part of Nature, p. 173-179, 2015.

  • Gottlieb, Yuval; Lalzar, Itai; Klasson, Lisa

    Distinctive Genome Reduction Rates Revealed by Genomic Analyses of Two Coxiella-Like Endosymbionts in Ticks

    Part of Genome Biology and Evolution, p. 1779-1796, 2015.

  • Saw, Jimmy H.; Spang, Anja; Zaremba-Niedzwiedzka, Katarzyna; Juzokaite, Lina et al.

    Exploring microbial dark matter to resolve the deep archaeal ancestry of eukaryotes

    Part of Philosophical Transactions of the Royal Society of London. Biological Sciences, 2015.

  • Ellegaard, Kirsten M.; Tamarit, Daniel; Javelind, Emelie; Olofsson, Tobias C. et al.

    Extensive intra-phylotype diversity in lactobacilli and bifidobacteria from the honeybee gut

    Part of BMC Genomics, 2015.

  • Tamarit, Daniel; Ellegaard, Kirsten M.; Wikander, Johan; Olofsson, Tobias et al.

    Functionally Structured Genomes in Lactobacillus kunkeei Colonizing the Honey Crop and Food Products of Honeybees and Stingless Bees

    Part of Genome Biology and Evolution, p. 1455-1473, 2015.

  • Hacke, Moritz; Bjorkholm, Patrik; Hellwig, Andrea; Himmels, Patricia et al.

    Inhibition of Ebola virus glycoprotein-mediated cytotoxicity by targeting its transmembrane domain and cholesterol

    Part of Nature Communications, 2015.

  • Sun, Yu; Whittle, Carrie-Ann; Corcoran, Pádraic; Johannesson, Hanna et al.

    Intron Evolution in Neurospora: the role of mutational bias and selection

    Part of Genome Research, p. 100-110, 2015.

  • Burri, Reto; Nater, Alexander; Kawakami, Takeshi; Mugal, Carina F. et al.

    Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers

    Part of Genome Research, p. 1656-1665, 2015.

  • Krzewinska, Maja; Bjornstad, Gro; Skoglund, Pontus; Ólason, Páll Isolfur et al.

    Mitochondrial DNA variation in the Viking age population of Norway

    Part of Philosophical Transactions of the Royal Society of London. Biological Sciences, p. 20130384-, 2015.

  • Björkholm, Patrik; Harish, Ajith; Hagström, Erik; Ernst, Andreas M. et al.

    Mitochondrial genomes are retained by selective constraints on protein targeting

    Part of Proceedings of the National Academy of Sciences of the United States of America, p. 10154-10161, 2015.

  • Martijn, Joran; Schulz, Frederik; Zaremba-Niedzwiedzka, Katarzyna; Viklund, Johan et al.

    Single-cell genomics of a rare environmental alphaproteobacterium provides unique insights into Rickettsiaceae evolution

    Part of The ISME Journal, p. 2373-2385, 2015.

  • Zepeda, Vanessa K.; Busse, Hans-Juergen; Golke, Jan; Saw, Jimmy H. W. et al.

    Terasakiispira papahanaumokuakeensis gen. nov., sp nov., a gammaproteobacterium from Pearl and Hermes Atoll, Northwestern Hawaiian Islands

    Part of International Journal of Systematic and Evolutionary Microbiology, p. 3609-3617, 2015.

  • Lindqvist, C Mårten; Nordlund, Jessica; Ekman, Diana; Johansson, Anna et al.

    The Mutational Landscape in Pediatric Acute Lymphoblastic Leukemia Deciphered by Whole Genome Sequencing

    Part of Human Mutation, p. 118-128, 2015.

  • Hammann, Philippe; Parmentier, Delphine; Cerciat, Marie; Reimegård, Johan et al.

    A method to map changes in bacterial surface composition induced by regulatory RNAs in Escherichia coli and Staphylococcus aureus

    Part of Biochimie, p. 175-179, 2014.

  • Blombach, Fabian; Launay, Helene; Snijders, Ambrosius P. L.; Zorraquino, Violeta et al.

    Archaeal MBF1 binds to 30S and 70S ribosomes via its helix-turn-helix domain

    Part of Biochemical Journal, p. 373-384, 2014.

  • Saha, Indrajit; Zubek, Julian; Klingstrom, Tomas; Forsberg, Simon et al.

    Ensemble learning prediction of protein-protein interactions using proteins functional annotations

    Part of MOL BIOSYST, p. 820-830, 2014.

  • Klasson, Lisa; Kumar, Nikhil; Bromley, Robin; Sieber, Karsten et al.

    Extensive duplication of the Wolbachia DNA in chromosome four of Drosophila ananassae

    Part of BMC Genomics, p. 1097-, 2014.

  • B42, Husargatan 3, Uppsala 2014-03-21 10:15

    Ellegaard, Kirsten Maren

    Genome Evolution and Niche Differentiation of Bacterial Endosymbionts

  • Guy, Lionel; Spang, Anja; Saw, Jimmy Hser Wah; Ettema, Thijs J. G. et al.

    'Geoarchaeote NAG1' is a deeply rooting lineage of the archaeal order Thermoproteales rather than a new phylum

    Part of The ISME Journal, p. 1353-1357, 2014.

  • Fu, Cheng-Jie; Sheikh, Sanea; Miao, Wei; Andersson, Siv G. E. et al.

    Missing Genes, Multiple ORFs, and C-to-U Type RNA Editing in Acrasis kona (Heterolobosea, Excavata) Mitochondrial DNA

    Part of Genome Biology and Evolution, p. 2240-2257, 2014.

  • Schneider, Daniela I.; Klasson, Lisa; Lind, Anders E.; Miller, Wolfgang J. et al.

    More than fishing in the dark: PCR of a dispersed sequence produces simple but ultrasensitive Wolbachia detection

    Part of BMC Microbiology, p. 121-, 2014.

  • Eiler, Alexander; Zaremba-Niedzwiedzka, Katarzyna; Martinez Garcia, Manuel; McMahon, Katherine et al.

    Productivity and salinity structuring of the microplankton revealed by comparative freshwater metagenomics

    Part of Environmental Microbiology, p. 2682-2698, 2014.

  • Ettema, Thijs J. G.; Lindas, Ann-Christin; Hjort, Karin; Poplawski, Andrzej B. et al.

    Rolf Bernander (1956-2014): pioneer of the archaeal cell cycle Obituary

    Part of Molecular Microbiology, p. 903-909, 2014.

  • Zhao, Weizhou; Andersson, Siv G. E.

    Single cell genomics of deep ocean bacteria

    Part of Trends in Microbiology, p. 233-234, 2014.

  • Guy, Lionel; Saw, Jimmy Hser Wah; Ettema, Thijs J. G.

    The Archaeal Legacy of Eukaryotes: A Phylogenomic Perspective

    Part of Cold Spring Harbor Perspectives in Biology, p. a016022-, 2014.

  • Kutsenko, Alexey; Svensson, Thomas; Nystedt, Björn; Lundeberg, Joakim et al.

    The Chironomus tentans genome sequence and the organization of the Balbiani ring genes

    Part of BMC Genomics, p. 819-, 2014.

  • Xu, Feifei; Jerlström-Hultqvist, Jon; Einarsson, Elin; Astvaldsson, Asgeir et al.

    The genome of Spironucleus salmonicida highlights a fish pathogen adapted to fluctuating environments

    Part of PLoS Genetics, p. e1004053-, 2014.

  • Offre, Pierre; Kerou, Melina; Spang, Anja; Schleper, Christa et al.

    Variability of the transporter gene complement in ammonia-oxidizing archaea

    Part of Trends in Microbiology, p. 665-675, 2014.

  • Guy, Lionel; Nystedt, Björn; Toft, Christina; Zaremba-Niedzwiedzka, Katarzyna et al.

    A Gene Transfer Agent and a Dynamic Repertoire of Secretion Systems Hold the Keys to the Explosive Radiation of the Emerging Pathogen Bartonella

    Part of PLOS Genetics, p. e1003393-, 2013.

  • Guy, Lionel; Jernberg, Cecilia; Norling, Jenny Arven; Ivarsson, Sofie et al.

    Adaptive Mutations and Replacements of Virulence Traits in the Escherichia coli O104:H4 Outbreak Population

    Part of PLoS ONE, p. e63027-, 2013.

  • Spang, Anja; Martijn, Joran; Saw, Jimmy Hser Wah; Lind, Anders E. et al.

    Close Encounters of the Third Domain: The Emerging Genomic View of Archaeal Diversity and Evolution

    Part of Archaea, p. 202358-, 2013.

  • Sentchilo, Vladimir; Mayer, Antonia P.; Guy, Lionel; Miyazaki, Ryo et al.

    Community-wide plasmid gene mobilization and selection

    Part of The ISME Journal, p. 1173-1186, 2013.

  • Viklund, Johan; Martijn, Joran; Ettema, Thijs; Andersson, Siv et al.

    Comparative and Phylogenomic Evidence that the Alphaproteobacterium HIMB59 is not a Member of the Oceanic SAR11 Clade

    Part of PLoS ONE, p. e78858-, 2013.

  • Ellegaard, Kirsten Maren; Klasson, Lisa; Näslund, Kristina; Bourtzis, Kostas et al.

    Comparative Genomics of Wolbachia and the Bacterial Species Concept

    Part of PLOS Genetics, p. e1003381-, 2013.

  • Martijn, Joran; Ettema, Thijs J. G.

    From archaeon to eukaryote: the evolutionary dark ages of the eukaryotic cell

    Part of Biochemical Society Transactions, p. 451-457, 2013.

  • Andersson, Jan O

    Gene Transfer and the Chimeric Nature of Eukaryotic Genomes

    Part of Lateral Gene Transfer in Evolution, p. 181-197, 2013.

  • Jerlström-Hultqvist, Jon; Einarsson, Elin; Xu, Feifei; Hjort, Karin et al.

    Hydrogenosomes in the diplomonad Spironucleus salmonicida

    Part of Nature Communications, p. 2493-, 2013.

  • Holmqvist, Erik; Reimegard, Johan; Wagner, Gerhart E. H.

    Massive functional mapping of a 5'-UTR by saturation mutagenesis, phenotypic sorting and deep sequencing

    Part of Nucleic Acids Research, p. e122-, 2013.

  • B41, Husargatan 3, Uppsala 2013-10-18 13:15

    Zaremba-Niedźwiedzka, Katarzyna

    Microbial Metagenomics: A Tale of the Dead and the Living

  • Zaremba-Niedzwiedzka, Katarzyna; Andersson, Siv G. E.

    No Ancient DNA Damage in Actinobacteria from the Neanderthal Bone

    Part of PLoS ONE, p. e62799-, 2013.

  • BMC, B41, Husargatan 8, Uppsala 2013-11-14 13:15

    Viklund, Johan

    Phylogenomics of Oceanic Bacteria

  • Zaremba-Niedzwiedzka, Katarzyna; Viklund, Johan; Zhao, Weizhou; Ast, Jennifer et al.

    Single cell genomics reveals low recombination frequencies in freshwater bacteria of the SAR11 clade

    Part of Genome Biology, 2013.

  • Ellegaard, Kirsten Maren; Klasson, Lisa; Andersson, Siv G. E.

    Testing the Reproducibility of Multiple Displacement Amplification on Genomes of Clonal Endosymbiont Populations

    Part of PLoS ONE, p. e82319-, 2013.

  • Siozios, Stefanos; Ioannidis, Panagiotis; Klasson, Lisa; Andersson, Siv G. E. et al.

    The Diversity and Evolution of Wolbachia Ankyrin Repeat Domain Genes

    Part of PLoS ONE, p. e55390-, 2013.

  • Nystedt, Bjorn; Street, Nathaniel R.; Wetterbom, Anna; Zuccolo, Andrea et al.

    The Norway spruce genome sequence and conifer genome evolution

    Part of Nature, p. 579-584, 2013.

  • Guy, Lionel; Nystedt, Björn; Sun, Yu; Näslund, Kristina et al.

    A genome-wide study of recombination rate variation in Bartonella henselae

    Part of BMC Evolutionary Biology, p. 65-, 2012.

  • Andersson, Siv G. E.; Goodman, A. L.

    Bacterial genomes: Next generation sequencing technologies for studies of bacterial ecosystems

    Part of Current Opinion in Microbiology, p. 603-604, 2012.

  • Ankarklev, Johan; Hestvik, Elin; Lebbad, Marianne; Lindh, Johan et al.

    Common Coinfections of Giardia intestinalis and Helicobacter pylori in Non-Symptomatic Ugandan Children

    Part of PLOS Neglected Tropical Diseases, p. e1780-, 2012.

  • Andersson, Jan O

    Double peaks reveal rare diplomonad sex

    Part of Trends in Parasitology, p. 46-52, 2012.

  • Eklund, Sandra; Lindås, Ann-Christin; Hamnevik, Emil; Widersten, Mikael et al.

    Exploring the active site of tripeptidyl-peptidase II through studies of pH dependence of reaction kinetics

    Part of Biochimica et Biophysica Acta - Proteins and Proteomics, p. 561-570, 2012.

  • Pelve, Erik A.; Lindås, Ann-Christin; Knöppel, Anna; Mira, Alex et al.

    Four chromosome replication origins in the archaeon Pyrobaculum calidifontis

    Part of Molecular Microbiology, p. 986-995, 2012.

  • Xu, Feifei; Jerlström-Hultqvist, Jon; Andersson, Jan O

    Genome-Wide Analyses of Recombination Suggest That Giardia intestinalis Assemblages Represent Different Species

    Part of Molecular biology and evolution, p. 2895-2898, 2012.

  • Guy, Lionel; Jernberg, Cecilia; Ivarsson, Sofie; Hedenstrom, Ingela et al.

    Genomic diversity of the 2011 European outbreaks of Escherichia coli O104:H4

    Part of Proceedings of the National Academy of Sciences of the United States of America, p. E3627-E3628, 2012.

  • Sun, Yu; Corcoran, Padraic; Menkis, Audrius; Whittle, Carrie A. et al.

    Large-Scale Introgression Shapes the Evolution of the Mating-Type Chromosomes of the Filamentous Ascomycete Neurospora tetrasperma

    Part of PLOS Genetics, p. e1002820-, 2012.

  • Andersson, Jan O

    Phylogenomic approaches underestimate eukaryotic gene transfer

    Part of Mobile Genetic Elements, p. 59-62, 2012.

  • Beier, Sara; Mohit, Vani; Ettema, Thijs J. G.; Östman, Örjan et al.

    Pronounced seasonal dynamics of freshwater chitinase genes and chitin processing

    Part of Environmental Microbiology, p. 2467-2479, 2012.

  • Caffrey, Brian E.; Williams, Tom A.; Jiang, Xiaowei; Toft, Christina et al.

    Proteome-Wide Analysis of Functional Divergence in Bacteria: Exploring a Host of Ecological Adaptations

    Part of PLoS ONE, p. e35659-, 2012.

  • Reimann, Julia; Lassak, Kerstin; Khadouma, Sunia; Ettema, Thijs J. G. et al.

    Regulation of archaella expression by the FHA and von Willebrand domain-containing proteins ArnA and ArnB in Sulfolobus acidocaldarius

    Part of Molecular Microbiology, p. 24-36, 2012.

  • C4:301, Biomedicinskt Centrum, Husargatan 3; BMC, Uppsala 2012-02-03 13:15

    Pelve, Erik A.

    Unique Solutions to Universal Problems: Studies of the Archaeal Cell

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    A combined evidence phylogenetic analysis of Anguimorpha (Reptilia: Squamata)

    Part of Cladistics, p. 230-277, 2011.

  • Brindefalk, Björn; Ettema, Thijs J. G.; Viklund, Johan; Thollesson, Mikael et al.

    A Phylometagenomic Exploration of Oceanic Alphaproteobacteria Reveals Mitochondrial Relatives Unrelated to the SAR11 Clade

    Part of PLoS ONE, p. e24457-, 2011.

  • Ettema, Thijs J. G.; Lindås, Ann-Christin; Bernander, Rolf

    An actin-based cytoskeleton in archaea

    Part of Molecular Microbiology, p. 1052-1061, 2011.

  • Bernander, Rolf; Lind, Anders E.; Ettema, Thijs J.G.

    An archaeal origin for the actin cytoskeleton: implications for eukaryogenesis

    Part of Communicative & Integrative Biology, p. 664-667, 2011.

  • Decaestecker, Ellen; Labbe, Pierrick; Ellegaard, Kirsten; Allen, Judith E. et al.

    Candidate innate immune system gene expression in the ecological model Daphnia

    Part of Developmental and Comparative Immunology, p. 1066-1075, 2011.

  • Pelve, Erik A.; Lindås, Ann-Christin; Martens-Habbena, Willm; de la Torre, José R. et al.

    Cdv-based cell division and cell cycle organization in the thaumarchaeon Nitrosopumilus maritimus

    Part of Molecular Microbiology, p. 555-566, 2011.

  • Andersson, Jan O

    Evolution of Patchily Distributed Proteins Shared between Eukaryotes and Prokaryotes: Dictyostelium as a Case Study

    Part of Journal of Molecular Biology and Biotechnology, p. 83-95, 2011.

  • Viklund, Johan; Ettema, Thijs; Andersson, Siv G. E.

    Independent Genome Reduction and Phylogenetic Reclassification of the Oceanic SAR11 Clade

    Part of Molecular biology and evolution, p. 599-615, 2011.

  • Söderberg, R. Jonas; Berg, Otto G.

    Kick-Starting the Ratchet: The Fate of Mutators in an Asexual Population

    Part of Genetics, p. 1129-1137, 2011.

  • Lebbad, Marianne; Petersson, Ingvor; Karlsson, Lillemor; Botero-Kleiven, Silvia et al.

    Multilocus Genotyping of Human Giardia Isolates Suggests Limited Zoonotic Transmission and Association between Assemblage B and Flatulence in Children

    Part of PLoS Neglected Tropical Diseases, p. e1262 e1262-, 2011.

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    Phylogeny, genomics, and symbiosis of Photobacterium

    Part of FEMS Microbiology Reviews, p. 324-342, 2011.

  • Gullberg, Erik; Cao, Sha; Berg, Otto G.; Ilbäck, Carolina et al.

    Selection of Resistant Bacteria at Very Low Antibiotic Concentrations

    Part of PLoS pathogens, p. e1002158-, 2011.

  • Ekmansalen, Evolutionsbiologiskt centrum, EBC Norbyvägen 14, Uppsala 2011-10-07 13:00

    Söderberg, Jonas

    Surviving the ratchet: Modelling deleterious mutations in asexual populations

  • Minczuk, Michal; He, Jiuya; Duch, Anna; Ettema, Thijs et al.

    TEFM (c17orf42) is necessary for transcription of human mtDNA

    Part of Nucleic Acids Research, p. 4284-4299, 2011.

  • Guy, Lionel; Ettema, Thijs J. G.

    The archaeal ‘TACK’ superphylum and the origin of eukaryotes

    Part of Trends in Microbiology, p. 580-587, 2011.

  • Llorens, Carlos; Futami, Ricardo; Covelli, Laura; Domínguez-Escribá, Laura et al.

    The Gypsy Database (GyDB) of mobile genetic elements: release 2.0.

    Part of Nucleic Acids Research, 2011.

  • Andersson, Jan O.

    The New Foundations of Evolution: On the Tree of Life

    Part of Systematic Biology, p. 114-115, 2011.

  • Christerson, Linus; Blomqvist, Maria; Grannas, Karin; Thollesson, Mikael et al.

    A novel Chlamydiaceae-like bacterium found in faecal specimens from sea birds from the Bering Sea

    Part of Environmental Microbiology Reports, p. 605-610, 2010.

  • Lall, Gurdeep K.; Darby, Alistair C.; Nystedt, Björn; MacLeod, Ewan T. et al.

    Amplified fragment length polymorphism (AFLP) analysis of closely related wild and captive tsetse fly (Glossina morsitans morsitans) populations

    Part of Parasites & Vectors, p. 47-, 2010.

  • Lind, Peter A; Tobin, Christina; Berg, Otto G; Kurland, Charles G et al.

    Compensatory gene amplification restores fitness after inter-species gene replacements

    Part of Molecular Microbiology, p. 1078-1089, 2010.

  • Toft, Christina; Andersson, Siv G. E.

    Evolutionary microbial genomics: insights into bacterial host adaptation

    Part of Nature reviews genetics, p. 465-475, 2010.

  • Lebbad, Marianne; Mattsson, Jens G; Christensson, Bodil; Ljungström, Bitte et al.

    From mouse to moose: multilocus genotyping of Giardia isolates from various animal species.

    Part of Veterinary parasitology, p. 231-239, 2010.

  • Bernander, Rolf; Ettema, Thijs J.G.

    FtsZ-less cell division in archaea and bacteria

    Part of Current Opinion in Microbiology, p. 747-752, 2010.

  • Richards, Stephen; Gibbs, Richard A.; Gerardo, Nicole M.; Moran, Nancy et al.

    Genome Sequence of the Pea Aphid Acyrthosiphon pisum

    Part of PLoS biology, p. e1000313-, 2010.

  • Guy, Lionel; Roat Kultima, Jens; Andersson, Siv G.E.

    genoPlotR: comparative gene and genome visualization in R

    Part of Bioinformatics, p. 2334-2335, 2010.

  • Gerardo, Nicole M; Altincicek, Boran; Anselme, Caroline; Atamian, Hagop et al.

    Immunity and other defenses in pea aphids, Acyrthosiphon pisum.

    Part of Genome Biology, 2010.

  • Roxström-Lindquist, Katarina; Jerlström-Hultqvist, Jon; Jörgensen, Anders; Troell, Karin et al.

    Large genomic differences between the morphologically indistinguishable diplomonads Spironucleus barkhanus and Spironucleus salmonicida.

    Part of BMC Genomics, p. 258-, 2010.

  • Lind, Peter A.; Berg, Otto G.; Andersson, Dan I

    Mutational robustness of ribosomal protein genes

    Part of Science, p. 825-827, 2010.

  • Berglund, Eva C.; Ellegaard, Kirsten; Granberg, Fredrik; Xie, Zhoupeng et al.

    Rapid diversification by recombination in Bartonella grahamii from wild rodents in Asia contrasts with low levels of genomic divergence in Northern Europe and America

    Part of Molecular Ecology, p. 2241-2255, 2010.

  • Fange, David; Berg, Otto G; Sjöberg, Paul; Elf, Johan et al.

    Stochastic reaction-diffusion kinetics in the microscopic limit

    Part of Proceedings of the National Academy of Sciences of the United States of America, p. 19820-19825, 2010.

  • Quebatte, Maxime; Dehio, Michaela; Tropel, David; Basler, Andrea et al.

    The BatR/BatS Two-Component Regulatory System Controls the Adaptive Response of Bartonella henselae during Human Endothelial Cell Infection

    Part of Journal of Bacteriology, p. 3352-3367, 2010.

  • Andersson, Jan O.; Jerlström-Hultqvist, Jon; Svärd, Staffan G.

    The genome of Giardia and other diplomonads

    Part of Anaerobic Parasitic Protozoa: Genomics and Molecular Biology, p. 23-44, 2010.

  • Williams, Tom A; Codoner, Francisco M; Toft, Christina; Fares, Mario A et al.

    Two chaperonin systems in bacterial genomes with distinct ecological roles

    Part of Trends in Genetics, p. 47-51, 2010.

  • Ettema, Thijs; Rolf, Bernander

    Cell division and the ESCRT complex: A surprise from the archaea

    Part of Communicative & Integrative Biology, p. 86-88, 2009.

  • Andersson, Jan O.

    Gene Transfer and Diversification of Microbial Eukaryotes

    Part of Annual Review of Microbiology, p. 177-193, 2009.

  • Andersson, Jan O.

    Horizontal gene transfer between microbial eukaryotes.

    Part of Methods in Molecular Biology, p. 473-487, 2009.

  • Panchaud, Alexandre; Guy, Lionel; Collyn, François; Haenni, Marisa et al.

    M-protein and other intrinsic virulence factors of Streptococcus pyogenes are encoded on an ancient pathogenicity island

    Part of BMC Genomics, 2009.

  • Ettema, Thijs; Andersson, Siv

    Comment on "A 3-hydroxypropionate/4-hydroxybutyrate autotrophic carbon dioxide assimilation pathway in Archaea"

    Part of Science, p. 342-, 2008.

  • Dutilh, Bas E.; Snel, Berend; Ettema, Thijs J.G.; Huynen, Martijn A. et al.

    Signature genes as a phylogenomic tool

    Part of Molecular biology and evolution, p. 1659-1667, 2008.

  • Grogan, Dennis W; Ozarzak, Melissa A; Bernander, Rolf

    Variation in gene content among geographically diverse Sulfolobus isolates

    Part of Environmental Microbiology, p. 137-146, 2008.

  • Andersson, Jan O; Andersson, Siv GE

    A century of typhus, lice and Rickettsia

    Part of Research in Microbiology, p. 143-150, 2000.

  • Lundgren, Magnus; Malandrin, Laurence; Eriksson, Stefan; Huber, Harald et al.

    Cell Cycle Characteristics of Crenarchaea: Unity among Diversity

  • Tamarit, Daniel; Ellegaard, Kirsten Maren; Wikander, Johan; Olofsson, Tobias et al.

    Comparative Genomics of Lactobacillus kunkeii indicates Selection for Rapid Growth in the Beebread

  • Tamarit, Daniel; Dyrhage, Karl; Edblom, Johan; Ås, Joel et al.

    Functionally structured genome architectures in Lactobacillus – insights into their variability and evolution

  • Eklund, Sandra; Lindås, Ann-Christin; Hamnevik, Emil; Widersten, Mikael et al.

    Inter-species variation in the pH dependence of tripeptidyl-peptidase II

  • Sun, Yu; Corcoran, Pádraic; Åslin, Matilda; Lao, Zhiqin et al.

    Lineage-specific chromosomal inversions in Neurospora tetrasperma

  • Zaremba-Niedźwiedzka, Katarzyna; Zheng, Zongli; Arvén-Norling, Jenny; Maixner, Frank et al.

    Metagenomic analysis of a distal gut sample from the Tyrolean Iceman

  • Söderberg, Jonas; Berg, Otto

    Mutation load in sexual and asexual populations: Effects of distributed selection coefficients on stationary fitness and rate of fitness loss

  • Harish, Ajith; Viklund, Johan; Andersson, Siv

    New protein functions evolve by expansion of ancestral fold architectures and evolution of disordered proteins de novo

  • Viklund, Johan; Andersson, Siv

    On the importance of taxonomically representative groups for the inference of adaptive traits in surface oceanic bacteria

  • Wu, Di; Yan, Junhong; Sun, Yu; Ronquist, Göran et al.

    Profiling individual protein complexes by proximity-dependent barcoding

  • Jerlström-Hultqvist, Jon; Einarsson, Elin; Xu, Feifei; Hjort, Karin et al.

    Spironucleus mitochondrial remnants suggest that hydrogenosomes are ancient organelles

    Part of Proceedings of the National Academy of Sciences of the United States of America

  • Zaremba-Niedźwiedzka,, Katarzyna; Sylvin, Isak; Andersson, Siv

    Testing fragment recruitment methods by simulating environmental communities of different complexities