Publications

  • Södersten, Erik; Toskas, Konstantinos; Rraklli, Vilma; Tiklova, Katarina et al.

    A comprehensive map coupling histone modifications with gene regulation in adult dopaminergic and serotonergic neurons

    Part of Nature Communications, 2018.

  • Bergin, Claudia; Wentrup, C.; Brewig, N.; Blazejak, A. et al.

    Acquisition of a Novel Sulfur-Oxidizing Symbiont in the Gutless Marine Worm Inanidrilus exumae

    Part of Applied and Environmental Microbiology, 2018.

  • Ahmed, Engy; Parducci, Laura; Unneberg, Per; Ågren, Rasmus et al.

    Archaeal community changes in Lateglacial lake sediments: Evidence from ancient DNA

    Part of Quaternary Science Reviews, p. 19-29, 2018.

  • Spang, Anja; Eme, Laura; Saw, Jimmy H.; Fernández Cáceres, Eva et al.

    Asgard archaea are the closest prokaryotic relatives of eukaryotes

    Part of PLoS Genetics, 2018.

  • Garcia, Sarahi L; Stevens, Sarah L R; Crary, Benjamin; Martinez-Garcia, Manuel et al.

    Contrasting patterns of genome-level diversity across distinct co-occurring bacterial populations

    Part of The ISME Journal, p. 742-755, 2018.

  • Martijn, Joran; Vosseberg, Julian; Guy, Lionel; Offre, Pierre et al.

    Deep mitochondrial origin outside the sampled alphaproteobacteria

    Part of Nature, p. 101-105, 2018.

  • Leger, Michelle M.; Eme, Laura; Stairs, Courtney W.; Roger, Andrew J. et al.

    Demystifying Eukaryote Lateral Gene Transfer

    Part of Bioessays, 2018.

  • Ling, Jiaxin; Smura, Teemu; Tamarit, Daniel; Huitu, Otso et al.

    Evolution and postglacial colonization of Seewis hantavirus with Sorex araneus in Finland

    Part of Infection, Genetics and Evolution, p. 88-97, 2018.

  • Bisch, Gaelle; Neuvonen, Minna M.; Pierce, Naomi E.; Russell, Jacob A. et al.

    Genome Evolution of Bartonellaceae Symbionts of Ants at the Opposite Ends of the Trophic Scale

    Part of Genome Biology and Evolution, p. 1687-1704, 2018.

  • Lind, Anders E.; Lewis, William H; Spang, Anja; Guy, Lionel et al.

    Genomes of two archaeal endosymbionts show convergent adaptations to an intracellular lifestyle.

    Part of The ISME Journal, p. 2655-2667, 2018.

  • Giacomello, Stefania; Asp, Michaela; Wärdell, Eva; Reimegård, Johan et al.

    New insights into the human heart development using a combined spatial and single-cell transcriptomics approach

    Part of HUMAN GENOMICS, p. 50 50-51 51, 2018.

  • Tamarit, Daniel; Neuvonen, Minna M.; Engel, Philipp; Guy, Lionel et al.

    Origin and evolution of the Bartonella Gene Transfer Agent

    Part of Molecular biology and evolution, p. 451-464, 2018.

  • Maric, Jovana; Ravindran, Avinash; Mazzurana, Luca; Björklund, Åsa K. et al.

    Prostaglandin E-2 suppresses human group 2 innate lymphoid cell function

    Part of Journal of Allergy and Clinical Immunology, p. 1761-1773.e6, 2018.

  • Humble, Emily; Dasmahapatra, Kanchon K.; Martínez Barrio, Álvaro; Gregorio, Ines et al.

    RAD Sequencing and a Hybrid Antarctic Fur Seal Genome Assembly Reveal Rapidly Decaying Linkage Disequilibrium, Global Population Structure and Evidence for Inbreeding

    Part of G3, p. 2709-2722, 2018.

  • Baiao, Guilherme Costa; Forshage, Mattias

    Revision of the West Palaearctic species of Rhoptromeris Forster, 1869 (Hymenoptera: Figitidae: Eucoilinae)

    Part of Journal of Natural History, p. 1201-1224, 2018.

  • Onsbring, Henning; Jamy, Mahwash; Ettema, Thijs J. G.

    RNA Sequencing of Stentor Cell Fragments Reveals Transcriptional Changes during Cellular Regeneration

    Part of Current Biology, p. 1281-1288.e3, 2018.

  • Franco, Irene; Johansson, Anna C. V.; Olsson, Karl; Vrtacnik, Peter et al.

    Somatic mutagenesis in satellite cells associates with human skeletal muscle aging

    Part of Nature Communications, 2018.

  • Urbina, Hector; Breed, Martin F.; Zhao, Weizhou; Gurrala, Kanaka Lakshmi et al.

    Specificity in Arabidopsis thaliana recruitment of root fungal communities from soil and rhizosphere

    Part of Fungal Biology, p. 231-240, 2018.

  • Graells, Tiscar; Ishak, Helena; Larsson, Madeleine; Guy, Lionel et al.

    The all-intracellular order Legionellales is unexpectedly diverse, globally distributed and lowly abundant.

    Part of FEMS Microbiology Ecology, 2018.

  • Hotopp, Julie C. Dunning; Klasson, Lisa

    The Complexities and Nuances of Analyzing the Genome of Drosophila ananassae and Its Wolbachia Endosymbiont

    Part of G3, p. 373-374, 2018.

  • Marques, Sueli; van Bruggen, David; Vanichkina, Darya Pavlovna; Floriddia, Elisa Mariagrazia et al.

    Transcriptional Convergence of Oligodendrocyte Lineage Progenitors during Development

    Part of Developmental Cell, p. 504-517, 2018.

  • Yutin, Natalya; Bäckstrom, Disa; Ettema, Thijs J G; Krupovic, Mart et al.

    Vast diversity of prokaryotic virus genomes encoding double jelly-roll major capsid proteins uncovered by genomic and metagenomic sequence analysis

    Part of Virology Journal, 2018.

  • Spang, Anja; Ettema, Thijs J. G.

    Archaeal evolution: The methanogenic roots of Archaea

    Part of Nature Microbiology, 2017.

  • Zaremba-Niedzwiedzka, Katarzyna; Fernández Cáceres, Eva; Saw, Jimmy Hser Wah; Bäckström, Disa et al.

    Asgard archaea illuminate the origin of eukaryotic cellular complexity

    Part of Nature, p. 353-+, 2017.

  • Pelve, Erik A.; Fontanez, Kristina M.; DeLong, Edward F.

    Bacterial Succession on Sinking Particles in the Ocean's Interior

    Part of Frontiers in Microbiology, 2017.

  • Ma'ayeh, Showgy Y.; Liu, Jingyi; Peirasmaki, Dimitra; Hörnaeus, Katarina et al.

    Characterization of the Giardia intestinalis secretome during interaction with human intestinal epithelial cells: The impact on host cells

    Part of PLoS Neglected Tropical Diseases, 2017.

  • Gomez-Velazquez, Melisa; Badia-Careaga, Claudio; Victoria Lechuga-Vieco, Ana; Nieto-Arellano, Rocio et al.

    CTCF counter-regulates cardiomyocyte development and maturation programs in the embryonic heart

    Part of PLoS Genetics, 2017.

  • Ponce-de-Leon, Miguel; Tamarit, Daniel; Calle-Espinosa, Jorge; Mori, Matteo et al.

    Determinism and Contingency Shape Metabolic Complementation in an Endosymbiotic Consortium

    Part of Frontiers in Microbiology, 2017.

  • Clement, Yves; Sarah, Gautier; Holtz, Yan; Homa, Felix et al.

    Evolutionary forces affecting synonymous variations in plant genomes

    Part of PLoS Genetics, 2017.

  • Gentekaki, Eleni; Curtis, Bruce A.; Stairs, Courtney W.; Klimes, Vladimir et al.

    Extreme genome diversity in the hyper-prevalent parasitic eukaryote Blastocystis

    Part of PLoS biology, 2017.

  • James, Rory Hennell; Caceres, Eva F.; Escasinas, Alex; Alhasan, Haya et al.

    Functional reconstruction of a eukaryotic-like E1/E2/(RING) E3 ubiquitylation cascade from an uncultured archaeon

    Part of Nature Communications, 2017.

  • Steige, Kim A.; Laenen, Benjamin; Reimegård, Johan; Scofield, Douglas G. et al.

    Genomic analysis reveals major determinants of cis-regulatory variation in Capsella grandiflora

    Part of Proceedings of the National Academy of Sciences of the United States of America, p. 1087-1092, 2017.

  • Strawbridge, Rona J.; Silveira, Angela; den Hoed, Marcel; Gustafsson, Stefan et al.

    Identification of a novel proinsulin-associated SNP and demonstration that proinsulin is unlikely to be a causal factor in subclinical vascular remodelling using Mendelian randomisation

    Part of Atherosclerosis, p. 196-204, 2017.

  • Le Rhun, Anais; Lecrivain, Anne-Laure; Reimegård, Johan; Proux-Wera, Estelle et al.

    Identification of endoribonuclease specific cleavage positions reveals novel targets of RNase III in Streptococcus pyogenes

    Part of Nucleic Acids Research, p. 2329-2340, 2017.

  • Williams, Tom A.; Szollosi, Gergely J.; Spang, Anja; Foster, Peter G. et al.

    Integrative modeling of gene and genome evolution roots the archaeal tree of life

    Part of Proceedings of the National Academy of Sciences of the United States of America, p. E4602-E4611, 2017.

  • Starnawski, Piotr; Bataillon, Thomas; Ettema, Thijs J. G.; Jochum, Lara M. et al.

    Microbial community assembly and evolution in subseafloor sediment

    Part of Proceedings of the National Academy of Sciences of the United States of America, p. 2940-2945, 2017.

  • Leger, Michelle M.; Kolisko, Martin; Kamikawa, Ryoma; Stairs, Courtney W. et al.

    Organelles that illuminate the origins of Trichomonas hydrogenosomes and Giardia mitosomes

    Part of NATURE ECOLOGY & EVOLUTION, 2017.

  • Zhu, Yafeng; Engstrom, Par G.; Tellgren-Roth, Christian; Baudo, Charles D. et al.

    Proteogenomics produces comprehensive and highly accurate protein-coding gene annotation in a complete genome assembly of Malassezia sympodialis

    Part of Nucleic Acids Research, p. 2629-2643, 2017.

  • Kee, Nigel; Volakakis, Nikolaos; Kirkeby, Agnete; Dahl, Lina et al.

    Single-Cell Analysis Reveals a Close Relationship between Differentiating Dopamine and Subthalamic Nucleus Neuronal Lineages

    Part of Cell Stem Cell, p. 29-40, 2017.

  • Giacomello, Stefania; Salmen, Fredrik; Terebieniec, Barbara K.; Vickovic, Sanja et al.

    Spatially resolved transcriptome profiling in model plant species

    Part of NATURE PLANTS, 2017.

  • Ameur, Adam; Dahlberg, Johan; Olason, Pall; Vezzi, Francesco et al.

    SweGen: a whole-genome data resource of genetic variability in a cross-section of the Swedish population

    Part of European Journal of Human Genetics, p. 1253-1260, 2017.

  • Sun, Yu; Tamarit, Daniel; Andersson, Siv

    Switches in Genomic GC Content Drive Shifts of Optimal Codons under Sustained Selection on Synonymous Sites

    Part of Genome Biology and Evolution, p. 2560-2579, 2017.

  • Marshall, Ian P. G.; Starnawski, Piotr; Cupit, Carina; Fernández Cáceres, Eva et al.

    The novel bacterial phylum Calditrichaeota is diverse, widespread and abundant in marine sediments and has the capacity to degrade detrital proteins

    Part of Environmental Microbiology Reports, p. 397-403, 2017.

  • Klasson, Lisa

    The unpredictable road to reduction

    Part of Nature ecology and evolution, p. 1062 1062-1063 1063, 2017.

  • Seeger, Christian; Butler, Margaret K.; Yee, Benjamin; Mahajan, Mayank et al.

    Tuwongella immobilis gen. nov., sp nov., a novel non-motile bacterium within the phylum Planctomycetes

    Part of International Journal of Systematic and Evolutionary Microbiology, p. 4923-4929, 2017.

  • Björkholm, Patrik; Ernst, Andreas M.; Hagström, Erik; Andersson, Siv G. E. et al.

    Why mitochondria need a genome revisited

    Part of FEBS Letters, p. 65-75, 2017.

  • Humble, E.; Martinez-Barrio, Alvaro; Forcada, J.; Trathan, P. N. et al.

    A draft fur seal genome provides insights into factors affecting SNP validation and how to mitigate them

    Part of Molecular Ecology Resources, p. 909-921, 2016.

  • Schulz, Frederik; Martijn, Joran; Wascher, Florian; Lagkouvardos, Ilias et al.

    A Rickettsiales symbiont of amoebae with ancient features

    Part of Environmental Microbiology, p. 2326-2342, 2016.

  • Reischauer, Sven; Stone, Oliver A.; Villasenor, Alethia; Chi, Neil et al.

    Cloche is a bHLH-PAS transcription factor that drives haemato-vascular specification

    Part of Nature, p. 294-+, 2016.

  • Troell, Karin; Hallstrom, Bjorn; Divne, Anna-Maria; Alsmark, Cecilia et al.

    Cryptosporidium as a testbed for single cell genome characterization of unicellular eukaryotes

    Part of BMC Genomics, 2016.