Department of Cell and Molecular Biology

Publications

Siv GE Andersson – A few selected publications (complete list below)

Björkholm P, Harish A, Hagström E, Ernst AM, Andersson SG (2015) Mitochondrial genomes are retained by selective constraints on protein targeting.
Proc Natl Acad Sci U S A 112:10154-10161.

Zaremba-Niedzwiedzka K, Viklund J, Zhao W, Ast J, Sczyrba A, Woyke T, McMahon K, Bertilsson S, Stepanauskas R, Andersson SG (2013) Single cell genomics reveal low recombination frequencies in freshwater bacteria of the SAR11 clade.
Genome Biol 28:R130.

Ellegaard K, Klasson L, Näslund K, Bourtzis K. Andersson SGE (2013) Comparative genomics of Wolbachia and the bacterial species concept.
PLoS Genet 9:e10033881.

Guy L, Nystedt B, Toft C, Zaremba K, Berglund E, Granberg F, Näslund K, Eriksson, A-S, Andersson SGE (2013) A gene transfer agent and a dynamic repertoire of secretion systems hold the keys to the explosive radiation of the emerging pathogen Bartonella.
PLoS Genet 9:e1003393.

Guy L, Jernberg C, Ivarsson S, Hedenström I, Engstrand L. Andersson SGE (2012) Genomic diversity of the 2011 European outbreaks of Escherichia coli O104:H4.
Proc Natl Acad Sci U S A 109:E3627-3628.

Toft C, Andersson SGE (2010) Evolutionary microbial genomics: insights into bacterial host adaptation.
Nature Rev Genet 11:465-475.

Klasson L, Westberg J, Sapountzis P, Näslund K, Lutnaes Y, Darby AC, Veneti Z, Chen L, Braig HR, Garrett R, Bourtzis K, Andersson SGE (2009) The mosaic genome structure of the Wolbachia wRi strain infecting Drosophila simulans.
Proc Natl Acad Sci U S A 106:5725-30.

Tamas I, Wernegreen JJ, Nystedt B, Kauppinen SN, Darby AC, Gomez-Valero L, Lundin D, Poole AM, Andersson SGE (2008) Endosymbiont gene functions impaired and rescued by polymerase infidelity at poly(A) tracts.
Proc Natl Acad Sci U S A 105:14934-9.

Cho NH, Kim HR, Lee JH, Kim SY, Kim J, Cha S, Kim SY, Darby AC, Fuxelius HH, Yin J, Kim JH, Kim J, Lee SJ, Koh YS, Jang WJ, Park KH, Andersson SGE, Choi MS, Kim IS. (2007) The Orientia tsutsugamushi genome reveals massive proliferation of conjugative type IV secretion system and host-cell interaction genes.
Proc Natl Acad Sci U S A 104:7981-6.

Larsson P, Oyston PC, Chain P, Chu MC, Duffield M, Fuxelius HH, Garcia E, Hälltorp G, Johansson D, Isherwood KE, Karp PD, Larsson E, Liu Y, Michell S, Prior J, Prior R, Malfatti S, Sjöstedt A, Svensson K, Thompson N, Vergez L, Wagg JK, Wren BW, Lindler LE, Andersson SGE, Forsman M, Titball RW (2005) The complete genome sequence of Francisella tularensis, the causative agent of tularemia.
Nature Genet 37:153-9.

Boussau B, Karlberg O, Frank C, Legault B. Andersson SG (2004) Computational inference of scenarios for α-Proteobacterial genome evolution.
Proc Natl Acad Sci U S A 101:9722-9726.

Alsmark UCM, Frank AC, Karlberg EO, Legault B, Canbäck B, Ardell D, Eriksson A-S, Näslund AK, Handley S, Huvet M, La Scola B, Holmberg M, Andersson SGE (2004) The louse bornehuman pathogen Bartonella quintana is a genomic derivative of the zoonotic agent Bartonella henselae.
Proc Natl Acad Sci U S A 101:9716-9721.

O´Callaghan D, Andersson SGE, Batut J (2004) Evolution of chronic infection strategies in the α-proteobacteria.
Nature Rev Microbiol 2:933-945.

Karlberg O, Andersson SGE (2003) Mitochondrial gene history and mRNA location: Is there a correlation?
Nature Rev Genet 4:391-397.

Tamas I, Klasson L, Canbäck B, Näslund AK, Eriksson AS, Wernegreen JJ, Sandström JP, Moran NA, Andersson SGE (2002) 50 million years of genomic stasis in endosymbiotic bacteria.
Science 296:2376-9.

Canback B, Andersson SGE, Kurland CG (2002) The global phylogeny of glycolytic enzymes. Proc Natl Acad Sci U S A 99:6097-102.

Thor S, Andersson SGE, Tomlinson A, Thomas JB (1999) A LIM-homeodomain combinatorial code for motor-neuron pathway selection.
Nature 397:76-80.

Andersson, S. G. E., Zomorodipour, A., Andersson, J. O., Sicheritz-Ponten, T., Alsmark, C. M. U., Podowski, R. M., Näslund, A. K., Eriksson, A.-C., Winkler, H. H. and C. G. Kurland (1998) The genome sequence of Rickettsia  prowazekii and the origin of mitochondria.
Nature 396:133-140.


Siv GE Andersson – Complete list of publications

  1. Andersson, S. G. E., Buckingham, R. H. Kurland, C. G. 1984. Does codon composition influence ribosome function? EMBO J. 3:91-91.
  2. Rojas, A. M., Ehrenberg M., Andersson, S. G. E. and Kurland, C. G. 1984. ppGpp inhibition of elongation factor-Tu, factor-G and factor-Ts during polypeptide synthesis. Mol. Gen. Genet. 197:36-45.
  3. Andersson, S. G. E. and C. G. Kurland. 1987. Elongating ribosomes in vivo are refractory to erythromycin. Biochimie 69:901-904.
  4. Andersson, S. G. E. and C. G. Kurland. 1988. Effects of erythromycin base and erythromycin esters on protein synthesis in vivo in Escherichia coli. J. Antimicrob. Chem. 22:605-612.
  5. Andersson, S. G. E. and C. G. Kurland. 1990. Codon preferences in free-living microorganisms. Microbiol. Rev. 54:198-210.
  6. Andersson, S. G. E. and C. G. Kurland. 1991. An extreme codon preference strategy – codon reassignment. Mol. Biol. Evol. 8:530-544.
  7. Campbell, G., Göring H., Lin, T., Spana, E., Andersson, S., Doe C.Q. and A. Tomlinson. 1994. RK2, a glial-specific homedomain protein required for embryonic nerve cord condensation and viability in Drosophila. Development 120:2957-2066.
  8. Andersson, S. G. E., Zomorodipour A., Winkler, H. H. and C. G. Kurland. 1995. Unusual organization of the ribosomal RNA genes in Rickettsia prowazekii. J. Bacteriol. 177:4171-4175.
  9. Andersson, S. G. E. and C. G. Kurland. 1995. Genomic evolution drives the evolution of the translation system. Biochem. Cell Biol. 73:775-787.
  10. Andersson, S. G. E. and P. M. Sharp. 1996. Codon usage in the Mycobacterium tuberculosis complex. Microbiology 142:915-925.
  11. Andersson, S. G. E. and P. M. Sharp. 1996. Codon usage and base composition in Rickettsia prowazekii. J. Bacteriol. 42:525-536.
  12. Syvanen, A.-C., Amiri, H., Jamal., A., Andersson, S. G. E. and C. G. Kurland. 1997. A chimeric disposition of the elongation factor genes in Rickettsia prowazekii. J. Bacteriol. 178:6192-6199.
  13. Andersson, J. O. and S. G. E. Andersson. 1997. Genomic rearrangements during evolution of the obligate intracellular parasite Rickettsia prowazekii as inferred from an analysis of 52015 bp nucleotide sequence. Microbiology 143:2783-2795.
  14. Andersson, S. G. E., Zomorodipour, A., Andersson, J. O., Sicheritz-Ponten, T., Alsmark, C. M. U., Podowski, R. M., Näslund, A. K., Eriksson, A.-C., Winkler, H. H. and C. G. Kurland. 1998. The genome sequence of Rickettsia prowazekii and the origin of mitochondria. Nature 396:133-140.
  15. Brynnel, E. U., Kurland, C. G. Moran, N. A. and S. G. E. Andersson. 1998. Evolutionary rates for tuf genes in endosymbionts of aphids. Mol. Biol. Evol. 15:574-582.
  16. Sicheritz-Pontén T., Kurland C. G. and S. G. E. Andersson. 1998. The bacterial origin of mitochondria inferred from a phylogenetic analysis of the cytochrome b and cytochrome c oxidase I genes. Biochim. Biophys. Acta 13:545-551.
  17. Troyer, J. M., Radulovic, S., Andersson, S. G. E. and A. F. Azad. 1998. Detection of point mutation in rpoB genes of rifampicin-resistant Rickettsi atyphi. Antimicrob. Agents Chemother. 42:1845-1846.
  18. Andersson, S. G. E. 1998. Bioenergetics of the obligate intracellular parasite Rickettsia prowazekii. Biochim. Biophys. Acta 1365:105-111.
  19. Andersson, S. G. E. and C. G. Kurland. 1998. Reductive evolution of resident genomes. Trends Microbiol. 6:263-268.
  20. Andersson, S. G. E. and C. G. Kurland. 1998. Ancient and recent horizontal transfer events: The origins of mitochondria. Acta Pathol. Microbiol. Immun. Scand. 106:5-14.
  21. Thor, S., Andersson, S. G. E., Tomlinson, A. and J. B. Thomas. 1999. A LIM homeodomain combinatorial code for motor neuron pathway selection. Nature 397:76-80.
  22. Zomorodipour, A. and S. G. E. Andersson. 1999. Comparative genome analysis of the obligate intracellular parasites Rickettsia prowazekii and Chlamydia trachomatis. FEBS Lett. 452:11-15.
  23. Andersson, S. G. E., Stothard, D. R., Fuerst, P. and C. G. Kurland. 1999. Molecular phylogeny and rearrangement of rRNA genes in Rickettsia species. Mol. Biol. Evol.16:987-995.
  24. Andersson, J. O. and S. G. E. Andersson. 1999. Genome degradation is an ongoing process in Rickettsia. Mol. Biol. Evol.16:1178-1191.
  25. Andersson, S. G. E. and C. G. Kurland. 1999. Origins of mitochondria and hydrogenosomes. Curr. Op. Microbiol. 2:535-541.
  26. Andersson, J. O. and S. G. E. Andersson. 1999. Insights into the evolutionary process of genome degradation. Curr. Op. Gen. Dev. 9:664-671.
  27. Karlberg, O., Canbäck B., Kurland, C.G. and S. G. E. Andersson. 2000. The dual origin of the yeast mitochondrial proteome. Yeast 17:170-187.
  28. Andersson, S. G. E. and C.G. Kurland. 2000. Origin and evolution of the mitochondrial proteome. Microbiol. Mol. Biol. Rev. 64:786-820.
  29. Andersson, J. O. and S. G. E. Andersson. 2000. A century of typhus, lice and Rickettsia. Res. Microbiol. 151:1-8.
  30. Andersson, S. G. E. and C. Dehio. 2000. Rickettsia prowazekii and Bartonella henselae: Differences in the intracellular life-styles revisited. Infec. J. Med. Microbiol. 290:135-141.
  31. Karlsson, J., Prior, R. G., Williams, K., Lindler, L., Brown, K. A., Chatwell, N., Hjalmarsson, K., Loman, N., Mack, K. A., Pallen, M., Popek, M., Sandström, G., Sjöstedt, A., Svensson, T., Tamas, I., Andersson, S. G. E., Wren, B. W., Oyston, P. C. F. and R. W. Titball. 2000. Sequencing of the Francisella tularensis strain Schu 4 genome reveals the shikimate and purine metabolic pathways, targets for the construction of a rationally attenuated vaccine. Microb. Comp. Genomics 5:25-39.
  32. Tamas, I., Svircev, Z. and S. G. E. Andersson. 2000. Determinative value of a portion of the nifH sequence for the genera Nostoc and Anabena (cyanobacteria). Curr. Microbiol. 41:197-200.
  33. Andersson, S. G. E. 2000. The genomics gamble. Nature Genetics 26:134-135.
  34. Sicheritz-Ponten, T. and S. G. E. Andersson. 2001. A phylogenomic approach to microbial evolution. Nucl. Acids. Res. 29:545-552.
  35. Andersson, J.O. and S. G. E. Andersson. 2001. Pseudogenes, junk DNA and the dynamics of Rickettsia genomes. Mol. Biol. Evol. 16:1178-1191.
  36. Sanchez, D. O., Zandomeni, R. O., Cravero, S., Verdun, R. E., Pierrou, E., Faccio, P., Diaz, G., Lanzavecchia, S., Aguero, F., Frasch, A.C., Andersson, S. G. E., Rossetti, O. L., Grau, O. and R. A. Ugalde. 2001. Gene discovery through genomic sequencing of Brucella abortus. Infect. Immun. 69:865-868.
  37. Tamas, I., Klasson, L. M., Sandström, J.P. and S. G. E. Andersson. 2001. Mutualists and parasites: How to paint yourself into a (metabolic) corner. FEBS Lett. 498:135-139.
  38. Dalevi, D. and S. G. E. Andersson. 2001. Discovering the dynamics of microbial genomes. IEEE Eng. Med. Biol. 20:55-60.
  39. Prior, R.G., Klasson, L., Larsson, P., Williams, K., Lindler, L., Sjöstedt, A., Svensson, T., Tamas, I., Wren, B.W., Oyston, P.C.F., Andersson, S.G.E. and R.W. Titball. 2001. Preliminary analysis and annotation of the partial genome sequence of Francisella tularensis. J. Appl. Microbiol. 91:1-7.
  40. Amiri, H. and S. G. E. Andersson. 2001. Rickettsia: The highly rearranged cousin of mitochondria. Res. Dev. Microbiol. 5:321-329.
  41. Tamas, I., Klasson, L., Canbäck, B., Näslund, K., Eriksson, A.-S., Sandström, J., Wernegreen, J., Moran, N.A. and S. G. E. Andersson. 2002. 50 million years of genomic stasis in endosymbiotic bacteria. Science 296:2376-2379.
  42. Canbäck, B., Andersson, S.G.E. and C.G. Kurland. 2002. The global phylogeny of glycolytic enzymes. Proc. Natl. Acad. Sci. U S A 99:6097-6102.
  43.  Frank, C., Amiri, H. and S. G. E. Andersson. 2002. Genome deterioration: Loss of repeated sequences and accumulation of junk DNA. Genetica. 115:1-12.
  44. Dalevi, D., Eriksen, N., Eriksson, K. and S. G. E. Andersson. 2002. Measuring genome divergence in bacteria: A case study using Chlamydian data. J. Mol. Evol. 55:23-35.
  45. Davids, W., Amiri, H. and S. G. E. Andersson. 2002. Small RNAs in Rickettsia: are they functional? Trends Genetics. 18:331-334.
  46. Amiri, H., Alsmark, U.C.M. and S. G. E. Andersson. 2002. Proliferation and deterioration of Rickettsia palindromic elements. Mol. Biol. Evol. 19:1234-1243.
  47. Laslett, D., Canbäck, B. and S. G. E. Andersson. 2002. BRUCE: a program for the detection of transfer-messenger RNA genes in nucleotide sequences. Nucl. Acid Res. 30:3449-3453.
  48. Repsilber, D., Liljeström, H. and S. G. E. Andersson. 2002. Reverse engineering of regulatory networks: simulation studies on a genetic algoritm approach for ranking hypotheses. BioSystems 66:31-41.
  49. Mira, A., Klasson, L. and S. G. E. Andersson. 2002. Microbial genome evolution: Sources of variability. Curr. Op. Microbiol. 5:506-512.
  50. Andersson, S. G. E., Alsmark, C., Canbäck, B., Davids, W., Frank, C., Karlberg, O., Klasson, L., Antoine-Legault, B., Mira, A. and Tamas, I. 2002. Comparative genomics of microbial pathogens and symbionts. Bioinformatics S2:S17.
  51. Lindroos, H. and S. G. E. Andersson. 2002. Visualizing metabolic pathways: Comparative genomics and expression analysis. Proc. IEEE 90:1793-1802.
  52. Karlberg, O. and S. G. E. Andersson. 2003. Mitochondrial gene history and mRNA location: Is there a correlation? Nature Rev. Genetics 4:391-397.
  53. Amiri, H., Davids, W. and S. G. E. Andersson. 2003. Birth and death of orphan genes in Rickettsia. Mol. Biol. Evol. 20:1575-1587.
  54. Amiri, H., Karlberg, O. and S. G. E. Andersson. 2003. Deep origin of plastid/parasite ATP/ADP translocases. J. Mol. Evol. 56:137-150.
  55. Minnick, M. F., Sappington, K. N., Smitherman, L. S., Andersson, S. G. E, Karlberg, O. and J. A. Carroll. 2003. Five-member gene family of Bartonella quintana. Inf. Immun. 7:814-821.
  56. Andersson, S. G. E., Karlberg, O., Canbäck, B. and C. G. Kurland. 2003. On the origin of mitochondria: a genomics perspective. Phil. Trans. R. Soc. Lond. B. 358: 168-179.
  57. Davids, W., Fuxelius, H.-H. and S. G. E. Andersson. 2003. The journey to smORFland. Yeast 4:537-541.
  58. Alsmark, U. C. M., Frank, A. C., Karlberg, E. O., Legault, B., Canbäck, B., Ardell, D., Eriksson, A.-S., Näslund, A. K., Handley, S., Huvet, M. La Scola, B., Holmberg, M. and S. G. E. Andersson. 2004. The louse-borne human pathogen Bartonella quintana is a genomic derivative of the zoonotic agent Bartonella henselae. Proc. Natl. Acad. Sci. U. S. A. 101:9716-9721.
  59. Boussau, B., Karlberg, O., Frank, C., Legault, B. and S. G. E. Andersson. 2004. Computational inference of scenarios for α-Proteobacterial genome evolution. Proc. Natl. Acad. Sci. U. S. A. 101:9722-9726.
  60. O´Callaghan, D., Andersson, S. G. E. and J. Batut. 2004. Evolution of chronic infection strategies in the α-proteobacteria. Nature Rev. Microbiol. 2:933-945.
  61. Klasson, L. and S. G. E. Andersson. 2004. Evolution of minimal-gene-sets in bacterial endosymbionts. Trends Microbiol. 12:37-43.
  62. Andersson, S. G. E. and V. A. J. Kempf. 2004. Host cell modulation by human, animal and plant pathogens. Int. J. Med. Microbiol. 293:1-7.
  63. Canbäck, B., Tamas, I. and S. G. E. Andersson. 2004. A phylogenomic study of endosymbiotic bacteria. Mol. Biol. Evol. 21:1110-1122.
  64. Rhomberg, T. A., Karlberg, O., Mini, T., Zimny-Arndt, U., Wickenberg, U., Röttgen, M., Jungblut, P. R., Jenö, P., Andersson, S. G. E. and C. Dehio. 2004. Proteomic analysis of the sarcosine-insoluble outer membrane fraction of the bacterial pathogen Bartonella henselae. Proteomics 4:3021-3033.
  65. Riess, T. M., Andersson, S. G. E., Lupas, A., Schaller, M., Schäfer, A., Kyme, P., Martin, J., Wälzlein, J.-H., Ehehalt, U., Lindroos, H., Schirle, M., Nordheim, A., Autenrieth, I. B. and V. A. J. Kempf. 2004. Bartonella adhesin A mediates a proangiogenic host cell response. J. Exp. Med. 200:1267-1278.
  66. Larsson, P., Oyston, P. C. F., Chain, P., Chu, M. C., Duffield, M., Fuxelius, H.-H., Garcia, E., Hälltorp, G., Johansson, D., Isherwood, K. E., Karp, P., Larsson, E., Liu, Y., Michell, S., Prior, J., Prior, R., Malfatti, S., Sjöstedt, A., Svensson, K., Thompson, N., Vergez, L., Wagg, J. K., Wren, B. W., Lindler, L. E., Andersson, S. G. E., Forsman, M. and R. Titball. 2005. The complete genome sequence of Francisella tularensis, the causative agent of tularemia. Nature Genet. 37:153-159.
  67. Foucault, C., La Scola, B., Lindroos, H., Andersson S. G. E. and D. Raoult. 2005. Multispacer typing technique for sequence-based typing of Bartonella quintana. J. Clin. Bacteriol. 43:41-48.
  68. Frank, A. C., Alsmark, U. C. M., Thollesson, M. and S. G. E. Andersson. 2005. Functional divergence and horizontal transfer of type four secretion systems. Mol. Biol. Evol. 22:1325-1336.
  69. Andersson, S. G. E. 2005. Deterioration of α-Proteobacterial human pathogen genomes. Nova Acta Leopoldina 344:1-6.
  70. Repsibler, R., Mira, A., Lindroos, H., Andersson, S. and A. Ziegler. 2005. Data rotation improves genomotyping efficiency. Biometrical J. 4:585-598.
  71. Lindroos, H. L., Mira, A., Repsilber, D. Vinnere, O., Näslund, K., Dehio, M., Dehio, C. and S. G. E. Andersson. 2005. Characterization of the genome composition of Bartonella koehlerae by microarray CGH profiling. J. Bacteriol. 187:6155-6165.
  72. Sällström, B. and S. G. E. Andersson. 2005. Genome reduction in the α- Proteobacteria. Curr. Op. Microbiol. 8:579-585.
  73. Ardell, D. A. and S. G. E. Andersson. 2006. TFAM detects co-evolution of tRNA identity rules with lateral transfer of histidyl-tRNA synthetase. Nucl. Acids Res. 34:893-904.
  74. Klasson, L. and S. G. E. Andersson. 2006. Strong asymmetric mutation bias in endosymbiont genomes coincide with loss of genes for replication restart pathways. Mol. Biol. Evol. 23:1031-1039.
  75. Sällström, B., Arnaout, R. A., Davids, W. and S. G. E. Andersson. 2006. Protein evolutionary rates correlate with expression independently of synonymous substitutions in Helicobacter pylori. J. Mol. Evol. 62:600-614.
  76. Lindroos, H., Vinnere, O., Mira, A., Repsilber, D., Näslund, K. and S. G. E. Andersson. 2006. Genome rearrangements, deletions and amplifications in the natural population of Bartonella henselae. J. Bacteriol. 188:7426-7439.
  77. Andersson, S. G. E. 2006. The bacterial world gets smaller. Science 314:259-260.
  78. Brindefalk, B., Viklund, J., Larsson, D., Thollesson, M. and S. G. E. Andersson. 2007. Origin and evolution of the mitochondrial aminoacyl-tRNA synthetases. Mol. Biol. Evol. 24:743-746.
  79. Klint, M., Fuxelius, HH., Goldkuhl, R. R., Skarin, H., Rutermark, C, Andersson, S. G. E., Persson, K. and B. Herrmann. 2007. High-resolution genotyping of Chlamydia trachomatis by multilocus sequence analysis. J. Clin. Microbiol. 45:1410-1414.
  80. Cho, N-K., Kim, H-R., Lee, J-H., Kim, S-Y., Kim, J. Cha, S., Kim, S-Y., Darby, A. C., Fuxelius, H-H., Yin, J., Kim, J-H., Kim, J. Lee, S-J., Koh, Y-S., Jang, W-J, Park, W-J., Andersson, S. G. E., Choi, M-S., and I-S. Kim. 2007. The Orientia tsutsugamushi genome reveals massive proliferation of conjugative type IV secretion system and host cell interaction genes. Proc. Natl. Acad. Sci. U S A 104:7981-7986.
  81. Darby, A. C., Cho, N.-H., Min, C. K., Cho, N. H. and S. G. E. Andersson. 2007. Intracellular pathogens go extreme: genome evolution in the Rickettsiales. Trends Genet. 23:511-520.
  82. Fuxelius, H. H., Darby, A., Min, C. K., Cho, N. H. and S. G. E. Andersson. 2007. The genomic and metabolic diversity of Rickettsia. Res. Microbiol. 158:745-753.
  83. Nystedt, B., Frank, A. C., Thollesson, M. and S. G. E. Andersson. 2008. Diversifying selcection and concerted evolution of at type IV secretion system. Mol. Biol. Evol. 25:287-300.
  84. Fuxelius, H.-H., Darby, A. C., Cho, N.H. and S. G. E. Andersson. 2008. Visualization of pseudogenes in intracellular bacteria reveals the different tracks to gene destruction. Genome Biol. 9:R42.
  85. Ettema, T. J. and S. G. E. Andersson. 2008. Comment on “A 3-hydroxypropionate/4-hydroxybutyrate autotrophic carbon dioxide assimilation pathway in Archaea”. Science 321:342.
  86. Tamas, I., Wernegreen, J. J., Nystedt, B., Kauppinen, S.N., Darby, A.C, Gomez-Valero, L., Lundin, L., Poole, A. M. and S. G. E. Andersson. 2008. Endosymbiont gene functions impaired and rescued by polymerase infidelity at poly (A) tracts. Proc. Natl. Acad. Sci. U S A 105:14934-14939.
  87. Klasson, L., Westerberg, J., Sapountzis, P., Näslund, K., Lutnaes, Y., Darby, A.C., Veneti, Z., Braig, H., Garrett, R., Bourtzis, K. and S. G. E. Andersson. 2009. The mosaic genome structure of the Wolbachia wRi strain infecting Drosophila simulans. Proc. Natl. Acad. Sci. U S A 106:5725-5730.
  88. Ettema, T. J. and S. G. E. Andersson. 2009. The alpha-proteobacteria: the Darwin finches of the bacterial world. Biol. Lett. 5:429-432.
  89. Berglund, E., Frank, C., Calteau, A., Vinnere Pettersson, O., Eriksson, A.-S., Näslund, K., Holmberg, M., Lindroos, H. and S. G. E. Andersson. 2009. Run-off replication of host-adaptability genes is associated with gene transfer agents in the genome of mouse-infecting Bartonella grahamii. PLoS Genet. 5:e1000546.
  90. Berglund, E. C., Nystedt, B. and S. G. E. Andersson. 2009. Computational resources in infectious disease: limitations and challenges. PLoS Comput. Biol. 5:e1000481.
  91. Berglund, E. C., Ehrenborg, C., Vinnere Pettersson, O., Granberg, F., Näslund, K., Holmberg, M. and S. G. E. Andersson. 2010. Genome dynamics of Bartonella grahamii in micro-populations of woodland rodents. BMC Genomics 11:152.
  92. Berglund, E. C., Ellegaard, K., Granberg, F., Xie, Z., Kosoy, M. Y., Birtles, R. J. and S. G. E. Andersson. 2010. Rapid diversification by recombination in Bartonella grahamii from wild rodents in Asia contrasts with low levels of genomic divergence in Northern Europe and America. Mol. Ecol. 19:2241-2255.
  93. Quebette, M., Dehio, M., Tropel, D., Basler, A., Toller, I., Raddatz, G., Engel, P., Huser, S., Schein, H., Lindroos, H., Andersson, S. G. E. and C. Dehio. 2010. The BatR/BatS two component regulatory system controls the adaptive response of Bartonella henselae during human endothelial cell infection. J. Bacteriol. 192:3352-2267.
  94. Klasson, L. and S. G. E. Andersson. 2010. Research on small genomes: implications for synthetic biology. Bioessays 32:288-295.
  95. Toft, C. and S. G. E. Andersson. 2010. Evolutionary microbial genomics: insights into bacterial host adaptation. Nature Rev. Genet. 11:465-475.
  96. Philippot, L., Andersson, S. G. E., Battin, T. J., Prosser, J. I., Schimel, J. P., Whitman, W. B. and S. Hallin. 2010. The ecological coherence of higher bacterial taxonomic ranks. Nature Rev. Microbiol. 8:523-529.
  97. Guy, L., Roat Kultima, J. and S. G. E. Andersson. 2010. genoPlotR: comparative gene and genome visualization in R. Bioinformatics 15:2334-2235.
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