Department of Cell and Molecular Biology

Publications

  • Munke, Anna; van der Schot, Gijs; Maia, Filipe; Ekeberg, Tomas et al.

    Coherent diffraction of single Rice Dwarf Virus particles using soft X-rays at the Linac Coherent Light Source

    Part of Nature Scientific Data, 2018.

  • Cortina, George A.; Hays, Jennifer M.; Kasson, P. M.

    Conformational Intermediate That Controls KPC-2 Catalysis and Beta-Lactam Drug Resistance

    Part of ACS Catalysis, p. 2741-2747, 2018.

  • Lundholm, Ida V.; Sellberg, Jonas A.; Ekeberg, Tomas; Hantke, Max F. et al.

    Considerations for three-dimensional image reconstruction from experimental data in coherent diffractive imaging

    Part of IUCrJ, p. 531-541, 2018.

  • Pabis, Anna; Risso, Valeria A.; Sanchez-Ruiz, Jose M.; Kamerlin, Shina C. Lynn et al.

    Cooperativity and flexibility in enzyme evolution

    Part of Current opinion in structural biology, p. 83-92, 2018.

  • Kaltenbach, Miriam; Burke, Jason R.; Dindo, Mirco; Pabis, Anna et al.

    Evolution of chalcone isomerase from a noncatalytic ancestor

    Part of Nature Chemical Biology, p. 548-555, 2018.

  • Gorkhover, Tais; Ulmer, Anatoli; Ferguson, Ken; Bucher, Max et al.

    Femtosecond X-ray Fourier holography imaging of free-flying nanoparticles

    Part of Nature Photonics, p. 150-153, 2018.

  • Zawada, Katarzyna E.; Okamoto, Kenta; Kasson, Peter M.

    Influenza Hemifusion Phenotype Depends on Membrane Context: Differences in Cell-Cell and Virus-Cell Fusion

    Part of Journal of Molecular Biology, p. 594-601, 2018.

  • Allen, Andrew J.; Hajdu, Janos; McIntyre, Garry J.

    Journal of Applied Crystallography: the first 50 years and beyond

    Part of Journal of applied crystallography, p. 233-234, 2018.

  • Östlin, Christofer; Timneanu, Nicusor; Jönsson, H. Olof; Ekeberg, Tomas et al.

    Reproducibility of Single Protein Explosions Induced by X-ray Lasers

    Part of Physical Chemistry, Chemical Physics - PCCP, p. 12381-12389, 2018.

  • Kasson, Peter

    Simulations and Experiments Show a Mechanistic Role for Influenza Fusion Peptides in Membrane Bending and Fusion Stoichiometry

    Part of Biophysical Journal, p. 605A-605A, 2018.

  • Naumova, Maria; Khakhulin, Dmitry; Rebarz, Mateusz; Rohrmueller, Martin et al.

    Structural dynamics upon photoexcitation-induced charge transfer in a dicopper(I)-disulfide complex

    Part of Physical Chemistry, Chemical Physics - PCCP, p. 6274-6286, 2018.

  • Valegård, Karin; Hasse, Dirk; Andersson, Inger; Gunn, Laura H. et al.

    Structure of Rubisco from Arabidopsis thaliana in complex with 2-carboxyarabinitol-1,5-bis­phosphate

    Part of ACTA CRYSTALLOGRAPHICA SECTION D: STRUCTURAL BIOLOGY, p. 1-9, 2018.

  • Carlsson, Gunilla H.; Hasse, Dirk; Cardinale, Francesca; Prandi, Cristina et al.

    The elusive ligand complexes of the DWARF14 strigolactone receptor

    Part of Journal of Experimental Botany, p. 2345-2354, 2018.

  • Yu, Young-Sang; Farmand, Maryam; Kim, Chunjoong; Liu, Yijin et al.

    Three-dimensional localization of nanoscale battery reactions using soft X-ray tomography

    Part of Nature Communications, 2018.

  • Dicke, B.; Hoffmann, A.; Stanek, J.; Rampp, M. S. et al.

    Transferring the entatic-state principle to copper photochemistry

    Part of Nature Chemistry, p. 355-362, 2018.

  • Beyerlein, Kenneth; Jönsson, Olof; Alonso-Mori, Roberto; Aquila, Andrew et al.

    Ultrafast non-thermal heating of water initiated by an X-ray laser

    Part of Proceedings of the National Academy of Sciences of the United States of America, p. 5652-5657, 2018.

  • Pietrini, Alberto; Nettelblad, Carl

    Using convex optimization of autocorrelation with constrained support and windowing for improved phase retrieval accuracy

    Part of Optics Express, p. 24422-24443, 2018.

  • Pietrini, Alberto; Nettelblad, Carl

    Artifact reduction in the CSPAD detectors used for LCLS experiments

    Part of Journal of Synchrotron Radiation, p. 1092-1097, 2017.

  • Gunn, Laura; Valegard, K; Andersson, Inger

    A unique structural domain in Methanococcoides burtonii ribulose-1,5-bisphosphatecarboxylase/oxygenase (Rubisco) acts as a small subunit mimic

    Part of Journal of Biological Chemistry, p. 6838-6850, 2017.

  • Reddy, Hemanth K. N.; Yoon, Chun Hong; Aquila, Andrew; Awel, Salah et al.

    Coherent soft X-ray diffraction imaging of Coliphage PR772 at the Linac coherent light source

    Part of Scientific Data, 2017.

  • Zhang, Jin; Zhang, Haiyang; Wu, Tao; Wang, Qi et al.

    Comparison of Implicit and Explicit Solvent Models for the Calculation of Solvation Free Energy in Organic Solvents

    Part of Journal of Chemical Theory and Computation, p. 1034-1043, 2017.

  • Kurta, Ruslan P.; Donatelli, Jeffrey J.; Yoon, Chun Hong; Berntsen, Peter et al.

    Correlations in scattered X-ray laser pulses reveal nanoscale structural features of viruses

    Part of Physical Review Letters, p. 158102:1-7, 2017.

  • Kurimoto, Eiji; Satoh, Tadashi; Ito, Yuri; Ishihara, Eri et al.

    Crystal structure of human proteasome assembly chaperone PAC4 involved in proteasome formation

    Part of Protein Science, p. 1080-1085, 2017.

  • Larsson, Anna M.; Hasse, Dirk; Valegård, Karin; Andersson, Inger et al.

    Crystal structures of β-carboxysome shell protein CcmP: ligand binding correlates with the closed or open central pore

    Part of Journal of Experimental Botany, p. 3857-3867, 2017.

  • Daurer, Benedikt J.; Okamoto, Kenta; Bielecki, Johan; Maia, Filipe R. N. C. et al.

    Experimental strategies for imaging bioparticles with femtosecond hard X-ray pulses

    Part of IUCrJ, p. 251-262, 2017.

  • Liao, Qinghua; Pabis, Anna; Strodel, Birgit; Kamerlin, Shina Caroline Lynn et al.

    Extending the Nonbonded Cationic Dummy Model to Account for Ion-Induced Dipole Interactions

    Part of Journal of Physical Chemistry Letters, p. 5408-5414, 2017.

  • Popp, David; Loh, N. Duane; Zorgati, Habiba; Ghoshdastider, Umesh et al.

    Flow-aligned, single-shot fiber diffraction using a femtosecond X-ray free-electron laser

    Part of CYTOSKELETON, p. 472 472-481 481, 2017.

  • Jönsson, H. Olof; Caleman, Carl; Andreasson, Jakob; Timneanu, Nicusor et al.

    Hit detection in serial femtosecond crystallography using X-ray spectroscopy of plasma emission

    Part of IUCrJ, p. 778-784, 2017.

  • Ryan, Rebecca A.; Williams, Sophie; Martin, Andrew V.; Dilanian, Ruben A. et al.

    Measurements of Long-range Electronic Correlations During Femtosecond Diffraction Experiments Performed on Nanocrystals of Buckminsterfullerene

    Part of Journal of Visualized Experiments, 2017.

  • Daurer, Benedikt J.; Krishnan, Hari; Perciano, Talita; Rocha Neves Couto Maia, Filipe et al.

    Nanosurveyor: a framework for real-time data processing

    Part of Advanced Structural and Chemical Imaging, 2017.

  • Farmand, Maryam; Celestre, Richard; Denes, Peter; Kilcoyne, A. L. David et al.

    Near-edge X-ray refraction fine structure microscopy

    Part of Applied Physics Letters, 2017.

  • Munke, Anna; Persson, Jonas; Weiffert, Tanja; De Genst, Erwin et al.

    Phage display and kinetic selection of antibodies that specifically inhibit amyloid self-replication

    Part of Proceedings of the National Academy of Sciences of the United States of America, p. 6444-6449, 2017.

  • Okamoto, Kenta; Miyazaki, Naoyuki; Song, Chihong; Maia, Filipe et al.

    Structural variability and complexity of the giant Pithovirus sibericum particle revealed by high-voltage electron cryo-tomography and energy-filtered electron cryo-microscopy

    Part of Scientific Reports, 2017.

  • Hajdu, Janos

    Structures from poorly diffracting crystals: a new start for macromolecular crystallography?

    Part of Journal of applied crystallography, p. 982-984, 2017.

  • Kasson, Peter; Cortina, George; Latallo, Malgorzata

    Understanding allosteric modulation of beta lactamase function and bacterial drug resistance

    Part of Abstract of Papers of the American Chemical Society, 2017.

  • Espinoza, Shirly; Neuber, Gerd; Brooks, Christopher D.; Besner, Bastian et al.

    User oriented end-station on VUV pump-probe magneto-optical ellipsometry at ELI beamlines

    Part of Applied Surface Science, p. 378-382, 2017.

  • Hantke, Max F.; Hasse, Dirk; Ekeberg, Tomas; John, Katja et al.

    A data set from flash X-ray imaging of carboxysomes

    Part of Scientific Data, 2016.

  • Maia, Filipe R. N. C.; White, Thomas A.; Loh, N. Duane; Hajdu, Janos et al.

    CCP-FEL: a collection of computer programs for free-electron laser research

    Part of Journal of applied crystallography, p. 1117-1120, 2016.

  • Munke, Anna; Andreasson, Jakob; Aquila, Andrew; Awel, Salah et al.

    Coherent diffraction of single Rice Dwarf virus particles using hard X-rays at the Linac Coherent Light Source

    Part of Scientific Data, p. 160064:1-12, 2016.

  • Meyer, Peter A.; Socias, Stephanie; Key, Jason; Ransey, Elizabeth et al.

    Data publication with the structural biology data grid supports live analysis

    Part of Nature Communications, 2016.

  • Szöke, Abraham; Hajdu, Janos

    Energy utilization in fluctuating biological energy converters

    Part of Structural Dynamics, 2016.

  • Daurer, Benedikt J.; Hantke, Max F.; Nettelblad, Carl; Maia, Filipe R. N. C. et al.

    Hummingbird: monitoring and analyzing flash X-ray imaging experiments in real time

    Part of Journal of applied crystallography, p. 1042-1047, 2016.

  • van der Schot, Gijs; Svenda, Martin; Maia, Filipe R.N.C.; Hantke, Max F. et al.

    Open data set of live cyanobacterial cells imaged using an X-ray laser

    Part of Scientific Data, 2016.

  • Marchesini, Stefano; Krishnan, Hari; Daurer, Benedikt J.; Shapiro, David A. et al.

    SHARP: a distributed GPU-based ptychographic solver

    Part of Journal of applied crystallography, p. 1245-1252, 2016.

  • Ekeberg, Tomas; Svenda, Martin; Seibert, M. Marvin; Abergel, Chantal et al.

    Single-shot diffraction data from the Mimivirus particle using an X-ray free-electron laser

    Part of Scientific Data, 2016.

  • Gudmundsson, Mikael; Hansson, Henrik; Karkehabadi, Saeid; Larsson, Anna et al.

    Structural and functional studies of the glycoside hydrolase family 3 beta-glucosidase Cel3A from the moderately thermophilic fungus Rasamsonia emersonii

    Part of ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, p. 860-870, 2016.

  • Bielecki, Johan; Parker, Stewart F.; Mazzei, Laura; Börjesson, Lars et al.

    Structure and dehydration mechanism of the proton conducting oxide Ba2In2O5(H2O)(x)

    Part of Journal of Materials Chemistry A, p. 1224-1232, 2016.

  • Sharwood, Robert; Ghannoum, Oula; Kapralov, Maxim; Gunn, Laura et al.

    Temperature responses of Rubisco from Paniceae grasses provide opportunities for improving C3 photosynthesis

    Part of Nature Plants, 2016.

  • Karlsson, Johan; Martinelli, Anna; Fathali, Hoda M.; Bielecki, Johan et al.

    The effect of alendronate on biomineralization at the bone/implant interface

    Part of Journal of Biomedical Materials Research. Part A, p. 620-629, 2016.

  • Okamoto, Kenta; Miyazaki, Naoyuki; Larsson, Daniel S. D.; Kobayashi, Daisuke et al.

    The infectious particle of insect-borne totivirus-like Omono River virus has raised ridges and lacks fibre complexes

    Part of Scientific Reports, 2016.

  • Maia, Filipe R. N. C.; Hajdu, Janos

    The trickle before the torrent-diffraction data from X-ray lasers

    Part of Scientific Data, 2016.

  • Braun, Tatjana; Orlova, Albina; Valegård, Karin; Lindas, Ann-Christin et al.

    Archaeal actin from a hyperthermophile forms a single-stranded filament

    Part of Proceedings of the National Academy of Sciences of the United States of America, p. 9340-9345, 2015.

  • Allen, Andrew J.; Hajdu, Janos; Kaysser-Pyzalla, Anke R.

    Beyond the International Year of Crystallography

    Part of Journal of applied crystallography, p. 1-2, 2015.

  • van der Schot, Gijs; Svenda, Martin; Maia, Filipe R. N. C.; Hantke, Max et al.

    Imaging single cells in a beam of live cyanobacteria with an X-ray laser

    Part of Nature Communications, 2015.

  • Ekeberg, Tomas; Engblom, Stefan; Liu, Jing

    Machine learning for ultrafast X-ray diffraction patterns on large-scale GPU clusters

    Part of The international journal of high performance computing applications, p. 233-243, 2015.

  • Jönsson, H. Olof; Timneanu, Nicusor; Östlin, Christofer; Scott, Howard A. et al.

    Simulations of Radiation Damage as a Function of the Temporal Pulse Profile in Femtosecond X-ray Protein Crystallography

    Part of Journal of Synchrotron Radiation, p. 256-266, 2015.

  • Martin, Andrew V.; Corso, Justine K.; Caleman, Carl; Timneanu, Nicusor et al.

    Single-molecule imaging with longer X-ray laser pulses

    Part of IUCrJ, p. 661-674, 2015.

  • Hasse, Dirk; Larsson, Anna M; Andersson, Inger

    Structure of Arabidopsis thaliana Rubisco activase

    Part of Acta Crystallographica Section D, p. 800-808, 2015.

  • Aquila, A.; Barty, A.; Bostedt, C.; Boutet, S. et al.

    The linac coherent light source single particle imaging road map

    Part of Structural Dynamics, 2015.

  • Ekeberg, Tomas; Svenda, Martin; Abergel, Chantal; Maia, Filipe R. N. C. et al.

    Three-dimensional reconstruction of the giant mimivirus particle with an X-ray free-electron laser

    Part of Physical Review Letters, p. 098102:1-6, 2015.

  • Galli, Lorenzo; Son, Sang-Kil; Barends, Thomas R. M.; White, Thomas A. et al.

    Towards phasing using high X-ray intensity

    Part of IUCrJ, p. 627-634, 2015.

  • Caleman, Carl; Timneanu, Nicusor; Martin, Andrew V.; Jönsson, H. Olof et al.

    Ultrafast self-gating Bragg diffraction of exploding nanocrystals in an X-ray laser

    Part of Optics Express, p. 1213-1231, 2015.

  • Andreasson, Jakob; Martin, Andrew V.; Liang, Meng; Timneanu, Nicusor et al.

    Automated identification and classification of single particle serial femtosecond X-ray diffraction data

    Part of Optics Express, p. 2497-2510, 2014.

  • Barty, Anton; Kirian, Richard A.; Maia, Filipe R. N. C.; Hantke, Max et al.

    Cheetah: software for high-throughput reduction and analysis of serial femtosecond X-ray diffraction data

    Part of Journal of applied crystallography, p. 1118-1131, 2014.

  • Shapiro, David A.; Yu, Young-Sang; Tyliszczak, Tolek; Cabana, Jordi et al.

    Chemical composition mapping with nanometre resolution by soft X-ray microscopy

    Part of Nature Photonics, p. 765-769, 2014.

  • van Lun, Michiel; Hub, Jochen S.; van der Spoel, David; Andersson, Inger et al.

    CO2 and O-2 Distribution in Rubisco Suggests the Small Subunit Functions as a CO2 Reservoir

    Part of Journal of the American Chemical Society, p. 3165-3171, 2014.

  • Chapman, Henry N.; Caleman, Carl; Timneanu, Nicusor

    Diffraction before destruction

    Part of Philosophical Transactions of the Royal Society of London. Biological Sciences, p. 20130313-, 2014.

  • Passoni, Matteo; Zani, Alessandro; Sgattoni, Andrea; Dellasega, David et al.

    Energetic ions at moderate laser intensities using foam-based multi-layered targets

    Part of Plasma Physics and Controlled Fusion, p. 045001-, 2014.

  • Rath, Asawari D.; Timneanu, Nicusor; Maia, Filipe R. N. C.; Bielecki, Johan et al.

    Explosion dynamics of sucrose nanospheres monitored by time of flight spectrometry and coherent diffractive imaging at the split-and-delay beam line of the FLASH soft X-ray laser

    Part of Optics Express, p. 28914-28925, 2014.

  • Bielecki, Johan; Rata, A. D.; Borjesson, L.

    Femtosecond optical reflectivity measurements of lattice-mediated spin repulsions in photoexcited LaCoO3 thin films

    Part of Physical Review B. Condensed Matter and Materials Physics, p. 035129-, 2014.

  • Hantke, Max F.; Hasse, Dirk; Maia, Filipe R. N. C.; Ekeberg, Tomas et al.

    High-throughput imaging of heterogeneous cell organelles with an X-ray laser

    Part of Nature Photonics, p. 943-949, 2014.

  • Weierstall, Uwe; James, Daniel; Wang, Chong; White, Thomas A. et al.

    Lipidic cubic phase injector facilitates membrane protein serial femtosecond crystallography

    Part of Nature Communications, p. 3309-, 2014.

  • Kupitz, Christopher; Basu, Shibom; Grotjohann, Ingo; Fromme, Raimund et al.

    Serial time-resolved crystallography of photosystem II using a femtosecond X-ray laser

    Part of Nature, p. 261-265, 2014.

  • Bielecki, Johan; Parker, Stewart F.; Ekanayake, Dharshani; Rahman, Seikh M. H. et al.

    Short-range structure of the brownmillerite-type oxide Ba2In2O5 and its hydrated proton-conducting form BaInO3H

    Part of Journal of Materials Chemistry A, p. 16915-16924, 2014.

  • Lindas, Ann-Christin; Chruszcz, Maksymilian; Bernander, Rolf; Valegård, Karin et al.

    Structure of crenactin, an archaeal actin homologue active at 90 degrees C

    Part of Acta Crystallographica Section D, p. 492-500, 2014.

  • Kern, Jan; Tran, Rosalie; Alonso-Mori, Roberto; Koroidov, Sergey et al.

    Taking snapshots of photosynthetic water oxidation using femtosecond X-ray diffraction and spectroscopy

    Part of Nature Communications, p. 4371-, 2014.

  • Milathianaki, D.; Boutet, S.; Williams, G. J.; Higginbotham, A. et al.

    Femtosecond Visualization of Lattice Dynamics in Shock-Compressed Matter

    Part of Science, p. 220-223, 2013.

  • Ge, X.; Boutu, W.; Gauthier, D.; Wang, F. et al.

    Impact of wave front and coherence optimization in coherent diffractive imaging

    Part of Optics Express, p. 11441-11447, 2013.

  • Pedersoli, E.; Loh, N. D.; Capotondi, F.; Hampton, C. Y. et al.

    Mesoscale morphology of airborne core-shell nanoparticle clusters: x-ray laser coherent diffraction imaging

    Part of Journal of Physics B, p. 164033-, 2013.

  • Redecke, Lars; Nass, Karol; Deponte, Daniel P; White, Thomas A et al.

    Natively Inhibited Trypanosoma brucei Cathepsin B Structure Determined by Using an X-ray Laser

    Part of Science, p. 227-230, 2013.

  • Philippe, Nadege; Legendre, Matthieu; Doutre, Gabriel; Coute, Yohann et al.

    Pandoraviruses: Amoeba Viruses with Genomes Up to 2.5 Mb Reaching That of Parasitic Eukaryotes

    Part of Science, p. 281-286, 2013.

  • Loh, N. Duane; Starodub, Dmitri; Lomb, Lukas; Hampton, Christina Y. et al.

    Sensing the wavefront of x-ray free-electron lasers using aerosol spheres

    Part of Optics Express, p. 12385-12394, 2013.

  • Liu, Wei; Wacker, Daniel; Gati, Cornelius; Han, Gye Won et al.

    Serial Femtosecond Crystallography of G Protein-Coupled Receptors

    Part of Science, p. 1521-1524, 2013.

  • Broeker, N. K.; Gohlke, U.; Müller, J. J.; Uetrecht, Charlotte et al.

    Single amino acid exchange in bacteriophage HK620 tailspike protein results in thousand-fold increase of its oligosaccharide affinity

    Part of Glycobiology, p. 59-68, 2013.

  • Hasse, Dirk; Andersson, Evalena; Carlsson, Gunilla; Masloboy, Axel et al.

    Structure of the Homodimeric Glycine Decarboxylase P-protein from Synechocystis sp PCC 6803 Suggests a Mechanism for Redox Regulation

    Part of Journal of Biological Chemistry, p. 35333-35345, 2013.

  • Martin, A. V.; Morgan, A. J.; Ekeberg, Tomas; Loh, N. D. et al.

    The extraction of single-particle diffraction patterns from a multiple-particle diffraction pattern

    Part of Optics Express, p. 15102-15112, 2013.

  • Park, Hyung Joo; Loh, N. Duane; Sierra, Raymond G.; Hampton, Christina Y. et al.

    Toward unsupervised single-shot diffractive imaging of heterogeneous particles using X-ray free-electron lasers

    Part of Optics Express, p. 28729-28742, 2013.

  • Iwan, Bianca; Andreasson, Jakob; Bergh, Magnus; Schorb, Sebastian et al.

    Explosion, ion acceleration and molecular fragmentation of methane clusters in the pulsed beam of a free-electron laser

    Part of Physical Review A. Atomic, Molecular, and Optical Physics, p. 033201-, 2012.

  • Thomas, H.; Helal, A.; Hoffmann, K.; Kandadai, N. et al.

    Explosions of Xenon Clusters in Ultraintense Femtosecond X-Ray Pulses from the LCLS Free Electron Laser

    Part of Physical Review Letters, 2012.

  • Kassemeyer, Stephan; Steinbrener, Jan; Lomb, Lukas; Hartmann, Elisabeth et al.

    Femtosecond free-electron laser x-ray diffraction data sets for algorithm development

    Part of Optics Express, p. 4149-4158, 2012.

  • Loh, N. D.; Hampton, C. Y.; Martin, A. V.; Starodub, D. et al.

    Fractal morphology, imaging and mass spectrometry of single aerosol particles in flight

    Part of Nature, p. 513-517, 2012.

  • Boutet, Sébastien; Lomb, Lukas; Williams, Garth J; Barends, Thomas R M et al.

    High-resolution protein structure determination by serial femtosecond crystallography

    Part of Science, p. 362-364, 2012.

  • Koopmann, Rudolf; Cupelli, Karolina; Redecke, Lars; Nass, Karol et al.

    In vivo protein crystallization opens new routes in structural biology

    Part of Nature Methods, p. 259-262, 2012.

  • Johansson, Linda C; Arnlund, David; White, Thomas A; Katona, Gergely et al.

    Lipidic phase membrane protein serial femtosecond crystallography

    Part of Nature Methods, p. 263-265, 2012.

  • Cryan, J P; Glownia, J M; Andreasson, Jakob; Belkacem, A et al.

    Molecular frame Auger electron energy spectrum from N2

    Part of Journal of Physics B, p. 055601-, 2012.

  • Martin, A. V.; Wang, F.; Loh, N. D.; Ekeberg, Tomas et al.

    Noise-robust coherent diffractive imaging with a single diffraction pattern

    Part of Optics Express, p. 16650-16661, 2012.

  • Barty, Anton; Caleman, Carl; Aquila, Andrew; Timneanu, Nicusor et al.

    Self-terminating diffraction gates femtosecond X-ray nanocrystallography measurements

    Part of Nature Photonics, p. 35-40, 2012.

  • Aquila, Andrew; Hunter, Mark S.; Doak, R. Bruce; Kirian, Richard A. et al.

    Time-resolved protein nanocrystallography using an X-ray free-electron laser

    Part of Optics Express, p. 2706-2716, 2012.

  • Chapman, Henry N.; Fromme, Petra; Barty, Anton; White, Thomas A. et al.

    Femtosecond X-ray protein nanocrystallography

    Part of Nature, p. 73-77, 2011.

  • Pedersoli, Emanuele; Capotondi, Flavio; Cocco, Daniele; Zangrando, Marco et al.

    Multipurpose modular experimental station for the DiProI beamline of Fermi@Elettra free electron laser

    Part of Review of Scientific Instruments, p. 043711-, 2011.

  • Caleman, Carl; Huldt, Gösta; Maia, Filipe R. N. C.; Ortiz, Carlos et al.

    On the Feasibility of Nanocrystal Imaging Using Intense and Ultrashort X-ray Pulses

    Part of ACS Nano, p. 139 139-146 146, 2011.

  • Lomb, Lukas; Barends, Thomas R. M.; Kassemeyer, Stephan; Aquila, Andrew et al.

    Radiation damage in protein serial femtosecond crystallography using an x-ray free-electron laser

    Part of Physical Review B. Condensed Matter and Materials Physics, p. 214111-1-214111-6, 2011.

  • Andreasson, Jakob; Iwan, Bianca Stella; Andrejczuk, A.; Abreu, E. et al.

    Saturated ablation in metal hydrides and acceleration of protons and deuterons to keV energies with a soft-x-ray laser

    Part of Physical Review E. Statistical, Nonlinear, and Soft Matter Physics, p. 016403-, 2011.

  • Caleman, Carl; Bergh, Magnus; Scott, Howard A.; Spence, John C. H. et al.

    Simulations of radiation damage in biomolecular nanocrystals induced by femtosecond X-ray pulses

    Part of Journal of Modern Optics, p. 1486-1497, 2011.

  • Seibert, M. Marvin; Ekeberg, Tomas; Maia, Filipe R. N. C.; Svenda, Martin et al.

    Single mimivirus particles intercepted and imaged with an X-ray laser

    Part of Nature, p. 78-81, 2011.

  • Kirian, Richard A.; White, Thomas A.; Holton, James M.; Chapman, Henry N. et al.

    Structure-factor analysis of femtosecond micro-diffraction patterns from protein nanocrystals

    Part of Acta Crystallographica Section A, p. 131-140, 2011.

  • Iwan, Bianca S; Andreasson, Jakob; Andrejczuk, A.; Abreu, E. et al.

    TOF-OFF: A method for determining focal positions in tightly focused free-electron laser experiments by measurement of ejected ions

    Part of High Energy Density Physics, p. 336 336-342 342, 2011.

  • Yoon, Chun Hong; Schwander, Peter; Abergel, Chantal; Andersson, Inger et al.

    Unsupervised classification of single-particle X-ray diffraction snapshots by spectral clustering

    Part of Optics Express, p. 16542-16549, 2011.

  • Bogan, Michael J.; Boutet, Sebastien; Chapman, Henry N.; Marchesini, Stefano et al.

    Aerosol Imaging with a Soft X-Ray Free Electron Laser

    Part of Aerosol Science and Technology, p. I-VI, 2010.

  • Cryan, James P.; Glownia, J. M.; Andreasson, Jakob; Belkacem, A. et al.

    Auger Electron Angular Distribution of Double Core-Hole States in the Molecular Reference Frame

    Part of Physical Review Letters, p. 083004-, 2010.

  • Loh, N. D.; Bogan, M. J.; Elser, V.; Barty, A. et al.

    Cryptotomography: Reconstructing 3D Fourier Intensities from Randomly Oriented Single-Shot Diffraction Patterns

    Part of Physical Review Letters, p. 225501-1-225501-5, 2010.

  • Vinko, S. M.; Zastrau, U.; Mazevet, S.; Andreasson, Jakob et al.

    Electronic Structure of an XUV Photogenerated Solid-Density Aluminum Plasma

    Part of Physical Review Letters, p. 225001-, 2010.

  • Seibert, M. Marvin; Boutet, Sebastien; Svenda, Martin; Ekeberg, Tomas et al.

    Femtosecond diffractive imaging of biological cells

    Part of Journal of Physics B, p. 194015-, 2010.

  • Maia, Filipe R. N. C.; Ekeberg, Tomas; van der Spoel, David; Hajdu, Janos et al.

    Hawk: the image reconstruction package for coherent X-ray diffractive imaging

    Part of Journal of applied crystallography, p. 1535-1539, 2010.

  • Hau-Riege, Stefan P.; Boutet, Sebastien; Barty, Anton; Bajt, Sasa et al.

    Sacrificial Tamper Slows Down Sample Explosion in FLASH Diffraction Experiments

    Part of Physical Review Letters, p. 064801-, 2010.

  • Bogan, M. J.; Boutet, S.; Barty, A.; Benner, W. H. et al.

    Single-shot femtosecond x-ray diffraction from randomly oriented ellipsoidal nanoparticles

    Part of Physical Review Special Topics. Accelerators and Beams, p. 094701-, 2010.

  • Glownia, James M.; Cryan, J.; Andreasson, Jakob; Belkacem, A. et al.

    Time-resolved pump-probe experiments at the LCLS

    Part of Optics Express, p. 17620-17630, 2010.

  • Chapman, H N; Bajt, S; Barty, A; Benner, W H et al.

    Coherent imaging at FLASH

    Part of Journal of Physics, Conference Series, p. 012051-, 2009.

  • Wang, Conan K; Hu, Shu-Hong; Martin, Jennifer L; Sjögren, Tove et al.

    Combined X-ray and NMR Analysis of the Stability of the Cyclotide Cystine Knot Fold That Underpins Its Insecticidal Activity and Potential Use as a Drug Scaffold

    Part of Journal of Biological Chemistry, p. 10672-10683, 2009.

  • Caleman, Carl; Ortiz, Carlos; Marklund, Erik; Bultmark, Fredrik et al.

    Radiation damage in biological material: electronic properties and electron impact ionization in urea

    Part of Europhysics letters, p. 18005-, 2009.

  • Nelson, A. J.; Toleikis, S.; Chapman, H.; Bajt, S. et al.

    Soft x-ray free electron laser microfocus for exploring matter under extreme conditions

    Part of Optics Express, p. 18271-18278, 2009.

  • Jackson, Graham E; Mabula, Andre N; Stone, Shane R; Gäde, Gerd et al.

    Solution conformations of an insect neuropeptide: crustacean cardioactive peptide (CCAP)

    Part of Peptides, p. 557-564, 2009.

  • Maia, Filipe R. N. C.; Ekeberg, Tomas; Timneanu, Nicusor; van der Spoel, David et al.

    Structural variability and the incoherent addition of scattered intensities in single-particle diffraction

    Part of Physical Review E. Statistical, Nonlinear, and Soft Matter Physics, p. 031905-, 2009.

  • Hau-Riege, S. P.; London, R. A.; Bionta, R. M.; Ryutov, D. et al.

    Wavelength dependence of the damage threshold of inorganic materials under extreme-ultraviolet free-electron-laser irradiation

    Part of Applied Physics Letters, p. 111104-111104-3, 2009.

  • Patriksson, Alexandra; van der Spoel, David

    A temperature predictor for parallel tempering simulations

    Part of Physical Chemistry, Chemical Physics - PCCP, p. 2073-2077, 2008.

  • Behzadi, Hadi; Esrafili, Mehdi D; van der Spoel, David; Hadipour, Nasser L et al.

    A theoretical study of repeating sequence in HRP II: a combination of molecular dynamics simulations and (17)O quadrupole coupling tensors

    Part of Biophysical Chemistry, p. 76-80, 2008.

  • Bajt, Sasa; Chapman, Henry N; Spiller, Eberhard A; Alameda, Jennifer B et al.

    Camera for coherent diffractive imaging and holography with a soft-x-ray free-electron laser

    Part of Applied Optics, p. 1673-1683, 2008.

  • Gabrysch, Markus; Marklund, Erik; Hajdu, Janos; Twitchen, D. J. et al.

    Formation of secondary electron cascades in single-crystalline plasma-deposited diamond upon exposure to femtosecond x-ray pulses

    Part of Journal of Applied Physics, 2008.

  • Hess, Berk; Kutzner, Carsten; van der Spoel, David; Lindahl, Erik et al.

    GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation

    Part of Journal of Chemical Theory and Computation, p. 435-447, 2008.

  • Bergh, Magnus; Timneanu, Nicusor; Hau-Riege, S. P.; Scott, H. A. et al.

    Interaction of Ultrashort X-ray Pulses with B4C, SiC and Si

    Part of Physical Review E. Statistical, Nonlinear, and Soft Matter Physics, p. 026404-1-026404-8, 2008.

  • Bogan, Michael J; Benner, W Henry; Boutet, Sébastien; Rohner, Urs et al.

    Single particle X-ray diffractive imaging

    Part of Nano letters (Print), p. 310-6, 2008.

  • Lejon, Sara; Ellis, Jacqueline; Valegård, Karin

    The last step in cephalosporin C formation revealed: Crystal Structures of Deacetylcephalosporin C Acetyltransferase from Acremonium chrysogenum in Complexes with Reaction Intermediates

    Part of Journal of Molecular Biology, p. 935-944, 2008.

  • Lejon, Sara; Ellis, Jacqueline; Valegård, Karin

    The last step in cephalosporin C formation revealed: Crystal Structures of Deacetylcephalosporin C Acetyltransferase from Acremonium chrysogenum in Complexes with Reaction Intermediates

    Part of Journal of Molecular Biology, p. 935-944, 2008.

  • Chalupsky, J.; Juha, L.; Kuba, J.; Cihelka, J. et al.

    Characteristics of focused soft X-ray free-electron laser beam determined by ablation of organic molecular solids

    Part of Optics Express, p. 6036-6043, 2007.

  • Hau-Riege, Stefan P.; London, Richard A.; Chapman, Henry N.; Szöke, Abraham et al.

    Encapsulation and diffraction-pattern-correction methods to reduce the effect of damage in x-ray diffraction imaging of single biological molecules

    Part of Physical Review Letters, p. 198302-, 2007.

  • Chapman, Henry N; Hau-Riege, Stefan P; Bogan, Michael J; Bajt, Sasa et al.

    Femtosecond time-delay X-ray holography

    Part of Nature, p. 676-679, 2007.

  • Adams, Christopher; Kjeldsen, Frank; Patriksson, Alexandra; van Der Spoel, David et al.

    Probing Solution-Phase and Gas-Phase Structures of Trp-cage Cations by Chiral Substitution and Spectroscopic Techniques

    Part of International Journal of Mass Spectrometry, p. 263-273, 2006.

  • van der Spoel, David; Seibert, M Marvin

    Protein folding kinetics and thermodynamics from atomistic simulations

    Part of Physical Review Letters, p. 238102-, 2006.

  • Caleman, Carl; van der Spoel, David

    Temperature and structural changes of water in vacuum due to evaporation

    Part of Journal of Chemical Physics, p. 154508-, 2006.

  • Zhu, Chuanbao; Raber, Johan; Eriksson, Leif A.

    Hydrolysis Process of the Second Generation Platinum-Based Anticancer Drug cis-Amminedichlorocyclohexylamineplatinum(II)

    Part of The Journal of Physical Chemistry B, p. 12195-12205, 2005.

  • Harbst, M.; Hansen, T. N.; Caleman, Carl; Fullagar, W.K. et al.

    Studies if resolidification of non-thermally molten InSb using time-resolved X-ray diffraction

    Part of Applied Physics A, p. 893 893-900 900, 2005.

  • Raber, Johan; Zhu, Chuanbao; Eriksson, Leif A.

    Theoretical Study of Cisplatin Binding to DNA: The Importance of Initial Complex Stabilization

    Part of The Journal of Physical Chemistry B, p. 11006-11015, 2005.

  • Timneanu, Nicusor; Caleman, Carl; Hajdu, Janos; van der Spoel, David et al.

    Auger electron cascades in water and ice

    Part of Chemical Physics, p. 277-283, 2004.

  • Bergh, Magnus; Timneanu, Nicusor; van der Spoel, David

    Model for the Dynamics of a Water Cluster in an X-ray Free Electron Laser Beam

    Part of Physical Review E. Statistical, Nonlinear, and Soft Matter Physics, p. 051904-, 2004.

  • Raber, Johan; Zhu, Chuanbao; Eriksson, Leif A.

    The Activation of Anti-Cancer Drug Cisplatin – is the Activated Complex Fully Aquated?

    Part of Molecular Physics, p. 2537-2544, 2004.

  • Ekholm, Victor; Caleman, Carl; Bjärnhall Prytz, Nicklas; Walz, Marie-Madeleine et al.

    Strong Enrichment of Atmospherically Relevant Organic Ions at the Aqueous Interface: The Role of Ion Pairing and Cooperative Effects